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mcvickerlab
GenVarLoader
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d-laub
released this
17 Jul 21:28
·
182 commits
to main since this release
v0.39.0
ea8f702
Feat
flat-variants
: accept str/bytes/NucleotideAlphabet for VarWindowOpt.token_alphabet
svar2
: support spliced variant records
svar2
: scatter-write FFI entry for read-bound haplotypes
reverse
: rc_bounded_rows_inplace for scattered rows
Fix
svar2
: deterministic tie-break for scatter-write bounds sort
svar2
: validate out_bounds and to_rc in scatter-write FFI entry
reference
: reject in_memory=False with reordered/subset contigs (
#285
)
Refactor
svar2
: per-row destination bounds in the reconstruct core
Perf
svar2
: vectorize build_splice_plan permutation
svar2
: scatter-write spliced haplotypes, no Python re-order
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