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MetaCoAG v1.3.0

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@Vini2 Vini2 released this 26 Jul 10:03
· 6 commits to develop since this release
v1.3.0
f030be8

What's Changed

This release has improved the runtime substantially compared to the previous version (v1.2.2).

  • Added --continue flag to resume interrupted runs from the last completed stage.
  • Vectorised key composition and coverage scoring steps with NumPy/SciPy.
  • Parallelised expensive contig assignment and label propagation steps.
  • Optimised graph-distance queries and BFS traversal.
  • Improved memory efficiency with NumPy-backed feature storage and safer tetramer caching.
  • Fixed “too many open files” errors when writing many FASTA bins by limiting simultaneous open bin files.
  • Refactored the runner into a staged pipeline for easier maintenance and future optimisation.
  • Fix issues with megahit inputs by @xvazquezc in #55

New Contributors

Full Changelog: v1.2.2...v1.3.0

Please report any issues and suggestions under MetaCoAG Issues.

Contributors

xvazquezc
Assets 2
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