v0.2.0

What's Changed

Breaking changes

• Compatibility for cryoJAX 0.5.5 release by @michael-0brien in #14
• Name convention fixes: just_images -> only_images and mrcfile_settings -> mrcfile_options by @michael-0brien in #23

Bug Fixes

• Make STAR file data reads/writes thread-safe and eliminate spurious copies by @michael-0brien in #27

Deprecations / API updates

• Remove RelionParticleParameterFile.broadcasts_image_config to standardize behavior under vmap by @DSilva27 in #13

Features

• Implement cryospax.get_in_axes: a helper for vectorizing with respect to dataset output by @michael-0brien in #17
• Convenience methods for creating and loading datasets: RelionParticleDataset.empty and RelionParticleDataset.load by @michael-0brien in #24

Other Changes

• Drop support for python 3.10 by @michael-0brien in #35

New Contributors

• @DSilva27 made their first contribution in #13
• @pre-commit-ci[bot] made their first contribution in #18
• @dependabot[bot] made their first contribution in #32

Full Changelog: v0.1.2...v0.2.0

v0.2.0rc1

Merge pull request #34 from michael-0brien/dev

cryoSPAX 0.2.0 release

v0.1.2

What's Changed

Deprecations / API updates

• Remove RelionParticleParameterFile.rotation_convention; doesn't play nicely with make_image_model(..., rotation_convention=...) in cryoJAX 0.5.4 by @michael-0brien in #9

Full Changelog: v0.1.1...v0.1.2

v0.1.1

Mostly small optimizations and documentation upgrades.

What's Changed

Breaking changes

• RELION dataset naming fixes: loads_parameters -> just_images and exists_ok -> exist_ok by @michael-0brien in #6
• Static type checker fixes for optional TypedDict keys by @michael-0brien in #7

Full Changelog: v0.1.0...v0.1.1

v0.1.1rc1

Pre-release for 0.1.1

v0.1.0

Initial semi-major release of cryoSPAX. This includes the porting of cryojax.dataset, its full documentation, and minor API updates. The main one is a minor change to the RelionParticleParameterFile.__init__, i.e. RelionParticleParameterFile(..., options=...) rather than having a number of booleans such as updates_optics_group.

Full Changelog: v0.0.1...v0.1.0

v0.0.1

Initial release

v0.0.1rc3

Merge pull request #2 from michael-0brien/dev

cryoSPAX 0.0.1 release

v0.0.1rc2

go back to same config as cryojax. things should be working

v0.0.1rc1

Draft for initial release and test to check publishing workflow.