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setup auto-configures hooks — npx claude-cortex setup now installs PreCompact, SessionStart, and SessionEnd hooks into ~/.claude/settings.json using portable npx claude-cortex hook <name> commands.
Stop hook (opt-in) — npx claude-cortex setup --with-stop-hook installs a Stop hook that checks the last assistant message for notable content (decisions, fixes, learnings) and prompts Claude to use remember. Loop prevention is programmatic (stop_hook_active boolean check), not LLM-dependent. No API cost.
npx claude-cortex hook stop CLI command for manual invocation.