Skip to content

4.5.0

Choose a tag to compare

View all tags
@RoanKanninga RoanKanninga released this 22 May 09:13
· 131 commits to master since this release
4.5.0
52ba80b
This commit was created on GitHub.com and signed with GitHub’s verified signature.
GPG key ID: B5690EEEBB952194
Verified
Learn about vigilant mode.

Adding inhouse dragen functionality

  • created startInhouseDragenPipeline script; starts the DRAGEN Bcl to FastQ conversion + running inhouse Dragen pipeline (both nf_ngs_dna)
  • created startInhousePostDragenPipeline script; starts some post analysis steps (post_dragen workflow in nf_ngs_dna)

Updated scripts for incoming Genomescan data in sub batches

First batch will always have G sub letter (e.g. GS_300G), missing data will be delivered in project H(GS_300H) and a last post-delivery will be send as GS_300I

  • Updated PullAndProcessGsAnalysisData script
    • added functionality that checks if all data is there (Y/N in UMCG_CSV), when there is data missing it will automatically remove the missing sample from the original inhouse samplesheet and creates a new samplesheet for the the post delivery
  • removed the merging of all the data in one project (before the merged samplesheet was called GS_300), it will now automatically be in one samplesheet
Assets 2
Loading