mOTUs 4.1.0

Release of the mOTUs profiler version 4.1.0

Data

• Genomes Added 150k genomes from underrepresented environments
• Annotations Provide access to annotations through CLI
• Database Added toy database for testing #121

Improvements

• Corrected counting modes: Updated INSERT_NORM calculation. No change to INSERT_SCALED
• CLI: --help Doesn't throw an error.
• Multimapper: Multimapper resultion now deterministic #151
• Unsorted reads: Added --skip-pair-check flag for handling unsorted or singleton-containing paired-end inputs #143 #150
• Location: -db parameter for customm database location #147 #123 #149
• No annotation: Genomes with no annotations don't crash download #146
• list entries: genomes -l now lists searchable entries #145
• classify: Now reports bests hits even if genome can’t be assigned to mOTU
• download: Downloader now uses the motus-api. Download of annotation files enabled

Contributors

Code: @lilithfeer @marydmit @hjruscheweyh
Documentation: @marydmit @hjruscheweyh
Ideas/Feedback: @SuShiAtGit @LucasPaoli @pangenomics @gezel @AlessioMilanese @lilithfeer @cmfield @ASintsova @grexor @tpriest0 @samuelmiver