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CEMBA Web Portal

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Mouse Connectome Project edited this page Jul 10, 2020 · 13 revisions

CEMBA web portal help

🥅 Use Cases

  • Use tabular data to identify the available projections of TRIO tracing.
  • Use CCFv3, Marga drawings, and ARA to identify and visualize the contrast of regions of interests.
  • Provide entry points to molecule data and anatomy data.
  • Sagittal Brain Navigator to see the scope of slices on a sagittal plane.

⚙️ GUI

  • 🧠 Projections table of the TRIO tracing (EnvA Rabies, AAV2retro)
  • 🧠 ARA images
    • Levels (27, 33, 39, 46, 51, 57, 63, 69, 75, 81, 87, 91, 99, 105, 111, 117)
  • 🧠 CCF images and Marga drawings
    • Slices (1-16)
    • Drawings (1A-1C, 2A-2E, 3A-3F, 4A-4H, 5A-5J, 6A-6H, 7A-7J, 8A-8L, 9A-9L,
      10A-10J, 11A-11K, 12A-12J, 13A-13F, 14A-14D, 15B-15C, 16A~16C)
    • ARA Levels (21-27, 27-33, 33-39, 39-45, 45-51, 51-57, 57-63, 63-69,
      69-75, 75-81, 81-87, 87-93, 93-97, 97-103, 103-109, 109-115, 115-121)
  • 🧠 Sagittal Brain Navigator

Sagittal brain navigator diagram

💉TRIO tracers

* Env Rabies
  * EnvA G-deleted rabies RVdG-4mCherry
  * AAV8-hSyn-FLEX-TVA-P2A-GFP-2A-oG
* AAV (AAV2retro)
   * AAVretro-EF1a-Cre
ARA CCF
section1_ARA_MOs section1_CCF_MOs

ARA Level 27 / CEMBA CCF Slice 1 and Marga drawings (1A~1C)




ARA CCF
section2_ARA_MOs section2_CCF_MOs

ARA Level 33 / CEMBA CCF Slice 2 and Marga drawings (2A~2E)




ARA CCF
section3_ARA_MOP section3_CCF_MOP

ARA Level 39 / CEMBA CCF Slice 3 and Marga drawings (3A~3F)




ARA CCF
section4_ARA_MOP section4_CCF_MOP

ARA Level 46 / CEMBA CCF Slice 4 and Marga drawings (4A~4H)




ARA CCF
section5_ARA_MOP section5_CCF_MOP

ARA Level 51 / CEMBA CCF Slice 5 and Marga drawings (5A~5J)

ARA CCF
section6_ARA_SSs section6_CCF_SSs

ARA Level 57 / CEMBA CCF Slice 6 and Marga drawings (6A~6H)




ARA CCF
section7_ARA_SSs section7_CCF_SSs

ARA Level 63 / CEMBA CCF Slice 7 and Marga drawings (7A~7J)




ARA CCF
section8_ARA_SSs section8_CCF_SSs

ARA Level 69 / CEMBA CCF Slice 8 and Marga drawings (8A~8L)




ARA CCF
section9_ARA_SSp_SSs section1_CCF_SSP_SSs

ARA Level 75 / CEMBA CCF Slice 9 and Marga drawings (9A~9L)




ARA CCF
section10_ARA_AUDd section10_CCF_AUDd

ARA Level 81 / CEMBA CCF Slice 10 and Marga drawings (10A~10J)




ARA CCF
section11_ARA_AUDpo section11_CCF_AUDpo

ARA Level 87 / CEMBA CCF Slice 11 and Marga drawings (11A~11K)




ARA CCF
section12_ARA_ENTI section12_CCF_ENTI

ARA Level 91 / CEMBA CCF Slice 12 and Marga drawings (12A~12J)




ARA CCF
section13_ARA_ENTI section13_CCF_ENTI

ARA Level 99 / CEMBA CCF Slice 13 and Marga drawings (13A~13F)




ARA CCF
section14_ARA_ENTI section14_CCF_ENTI

ARA Level 105 / CEMBA CCF Slice 14 and Marga drawings (14A~14D)




ARA CCF
section15_ARA_MY section15_CCF_MY

ARA Level 111 / CEMBA CCF Slice 15 and Marga drawings (15B~15C)




ARA CCF
section16_ARA_MY section16_CCF_MY

ARA Level 117 / CEMBA CCF Slice 16 and Marga drawings (16A, 16C)




🔗 Link

trio_tracing_table

Dark grayed cell will give an user an option to jump




Data Repository of the Conectome Data -- Dashboard Page

Data Repository of our published cases (Dashboard page)

Note: Data will be available upon publication.




Gene methylation web portal

Gene methylation web portal (Brainome portal)




🤖 Run

cemba_portal_walkthrough

CEMBA Web Portal

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