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cellpose v2.1.1

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@carsen-stringer carsen-stringer released this 07 Nov 14:45
· 999 commits to main since this release
v2.1.1
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Implementing some minor fixes and updates

  • cellpose passes tests for python 3.9 and 3.10 across operating systems -- we still recommend python 3.8, particularly if you have issues with the install
  • added option to use Mac M1 chip (if installed with torch) with command line argument --gpu device mps
  • added option to run cellpose on a single file from the command like with --image_path as an alternative to --dir (#543)
  • added new suggestion mode to suggest best Cellpose 2 model
  • suppressed writing PNGs or outlines when no masks were found (#584)
  • added docs for all functions (#554)
  • fixed case sensitive image file detection (#555)
  • allow eval method of Cellpose and CellposeModel to take as input torch arrays (#557)
  • added the function io.add_model(/full/path/to/model) to add the model file to the hidden folder to use with GUI and CLI; can also access the function by running python -m cellpose --add_model /full/path/to/model (#558)
  • fixed issue with cursor not allowing resizing (#545 )
  • added mac instructions (#523)
  • forced tiff saving for masks > 2**16 (#524)
  • added pyqt5 import statement for windows 8.1 compatibility
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