PROTAS

Quick Start Demo

pip install torch torchvision torchaudio --index-url https://download.pytorch.org/whl/cu118
pip install -r requirements.txt


cd demo
sh ./demo/make_synthetic_data.sh
sh ./demo/make_synthetic_model.sh

Open jupyter notebook and run protas_demo.ipyb

Installation

Prerequisites

Python 3.8+ CUDA-Capable GPU (for training) R 4.0+ (for tcga pathway analysis and glmm)

License

This software is released under the Academic Software License (© 2025 UCLA).

• Who can use it: Academic or nonprofit researchers, for educational or academic research purposes only.

• Redistribution: You may share the Software (and derivative works) only with other academic or nonprofit researchers and only free of charge, and you must include the full license text.

• No warranty: The Software is provided “as is” with no warranty of any kind.

• Publication requirement: Any academic or scholarly publication arising from the use of this Software must include the following acknowledgment:

  The Software used in this research was created by Mara Pleasure at the BAIR Lab of UCLA. © 2025 UCLA.

• Commercial use: Commercial entities must contact software@tdg.ucla.edu for licensing opportunities.

Please see the LICENSE file for the full terms.