GitHub - mrForce/GenericMSA: This is an implementation of Multiple Sequence Alignment, where the "sequences" are grouped; we insert the gaps into all of the sequences in a group. C and Python

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This is an implementation of Multiple Sequence Alignment, where the "sequences" are grouped; we insert the gaps into all of the sequences in a group. C and Python

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Name		Name	Last commit message	Last commit date
Latest commit History 27 Commits
scoring_examples		scoring_examples
MSA.py		MSA.py
Makefile		Makefile
README		README
align.c		align.c
align.h		align.h
align.py		align.py
align_extensions_build.py		align_extensions_build.py
align_info.c		align_info.c
align_info.h		align_info.h

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This is basically a generic-ized Multiple Sequence Aligner, where it inserts gaps into each sequence to pad it to a pre-specified length. You have to specify the score matrix (not a substituation matrix, but the score of each possible call to the scoring function!).

I've made zero attempt to optimize it. I'm aligning 6 "sequences" to be of length 13 for a class project, and I don't care how long it takes to run.

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This is an implementation of Multiple Sequence Alignment, where the "sequences" are grouped; we insert the gaps into all of the sequences in a group. C and Python

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