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v0.41.0 — UniProtKB connector + search --json CLI

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@musharna musharna released this 03 Jul 21:33
v0.41.0
d1fdbb4

Added

  • UniProtKB connector (#15) — UniProtKB is now a first-class default source:
    full-text search reads the accurate x-total-results header (cursor-paginated,
    so like huggingface it contributes to page 1 only — offset>0 returns no rows),
    resolve attaches a FASTA FileEntry (unverified — no upstream checksum), and an
    injection-safe accession guard fails before any network call.
  • search --json one-shot CLI subcommand (#16) — an explicit search first-arg
    diverts to a one-shot CLI that prints the SearchResult.results array as JSON,
    enabling lightweight non-MCP consumers (e.g. recap's DaProvider). Bare invocation
    still starts the MCP server unchanged.

Fixed

  • Registry server.json description now fits the MCP registry's 100-char limit,
    with a guard test to keep it there.

Changed

  • Dependency bumps: starlette 1.1.0→1.3.1 (#10), aiohttp 3.14.0→3.14.1 (#11),
    cryptography 48.0.0→48.0.1 (#12), pydantic-settings 2.14.1→2.14.2 (#13),
    python-multipart 0.0.29→0.0.31 (#9), actions/checkout 6.0.3→7.0.0 (#14).
  • Re-recorded the stdio demo against the v0.40.0 tool surface.
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