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feat(extension_types): add pandas.DataFrame and pandas.Series as native value types#202

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eywalker merged 12 commits into
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eywalker/plt-1869-orcapod-support-pandasdataframe-as-a-native-value-type
Jul 1, 2026
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feat(extension_types): add pandas.DataFrame and pandas.Series as native value types#202
eywalker merged 12 commits into
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eywalker/plt-1869-orcapod-support-pandasdataframe-as-a-native-value-type

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@kurodo3

@kurodo3 kurodo3 Bot commented Jul 1, 2026

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Summary

  • Adds LogicalPandasDataFrame and LogicalPandasSeries to extension_types/pandas_type.py, mapping pd.DataFrame / pd.Series to Arrow large_binary via Arrow IPC stream bytes with preserve_index=True
  • Adds PandasDataFrameHandler and PandasSeriesHandler in builtin_handlers.py for content hashing — both convert to pa.Table and delegate to the existing StarfixArrowHasher for consistency with pa.Table hashing
  • Registers both types and handlers in contexts/data/v0.1.json
  • Full test coverage: protocol conformance, round-trips (12 DataFrame cases, 9 Series cases), hashing determinism, error paths, end-to-end integration over Parquet and Delta backends

Closes PLT-1869

Test plan

  • uv run pytest tests/test_extension_types/test_pandas_type.py -v — all pass
  • uv run pytest tests/test_hashing/test_pandas_handlers.py -v — all pass
  • uv run pytest tests/test_extension_types/test_roundtrips.py -v — all pass (parquet + delta)
  • uv run pytest tests/ -x -q — no regressions

🤖 Generated with Claude Code

kurodo3 Bot and others added 9 commits July 1, 2026 16:48
…otocol tests

Adds LogicalPandasDataFrame and LogicalPandasSeries to pandas_type.py,
both backed by Arrow IPC stream format over large_binary storage. Includes
7 protocol conformance tests for LogicalPandasDataFrame. Refs PLT-1869.
…from package __init__

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
Adds two new handlers to builtin_handlers.py that produce SHA-256
ContentHash values from Arrow IPC stream bytes, consistent with the
LogicalPandasDataFrame/LogicalPandasSeries storage representation.
… register in builtin registry

Rewrites PandasDataFrameHandler and PandasSeriesHandler to delegate to the
configured ArrowHasherProtocol (StarfixArrowHasher by default) instead of
computing raw SHA-256 of IPC bytes directly. Both handlers now accept an
optional arrow_hasher constructor argument with lazy default-context resolution,
matching the pattern used by ArrowTableHandler. Both handlers are registered
in register_builtin_python_type_handlers immediately after NumpyArrayHandler.
Updates test assertions from method=="sha256" to method=="arrow_v0.1" to match
the actual hasher_id returned by StarfixArrowHasher.
…hing handlers in v0.1 context (PLT-1869)

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
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Codecov Report

❌ Patch coverage is 93.16239% with 8 lines in your changes missing coverage. Please review.

Files with missing lines Patch % Lines
...capod/hashing/semantic_hashing/builtin_handlers.py 86.36% 6 Missing ⚠️
src/orcapod/extension_types/pandas_type.py 97.22% 2 Missing ⚠️

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Pull request overview

Adds first-class support for pandas.DataFrame and pandas.Series as native value types in orcapod by introducing Arrow extension logical types (stored as large_binary IPC bytes) and registering semantic hashing handlers + default-context wiring, with accompanying unit and integration tests.

Changes:

  • Introduces LogicalPandasDataFrame / LogicalPandasSeries logical types using Arrow IPC stream bytes (preserve_index=True) for lossless round-trips.
  • Adds PandasDataFrameHandler / PandasSeriesHandler that hash by converting to pa.Table and delegating to the configured Arrow hasher (arrow_v0.1 by default).
  • Registers new logical types and handlers in the default v0.1 data context and adds targeted tests for protocol conformance, hashing, and backend round-trips.

Reviewed changes

Copilot reviewed 9 out of 9 changed files in this pull request and generated 5 comments.

Show a summary per file
File Description
src/orcapod/extension_types/pandas_type.py Adds DataFrame/Series logical types and IPC (de)serialization helpers.
src/orcapod/hashing/semantic_hashing/builtin_handlers.py Adds pandas semantic hash handlers delegating to the Arrow hasher and registers them.
src/orcapod/contexts/data/v0.1.json Registers pandas logical types + handlers and adds a changelog entry.
src/orcapod/extension_types/__init__.py Exposes the new logical types in the package public API.
tests/test_extension_types/test_pandas_type.py Unit tests for logical type protocol + round-trips across common dtypes/index cases.
tests/test_hashing/test_pandas_handlers.py Unit tests for pandas hashing handlers (determinism, differences, error paths).
tests/test_extension_types/test_roundtrips.py End-to-end storage backend round-trip tests for DataFrame/Series.
superpowers/specs/2026-07-01-pandas-native-types-design.md Design spec describing the feature and expected behavior (needs alignment with implementation).
superpowers/plans/2026-07-01-pandas-native-types.md Implementation plan document for the feature.

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Comment on lines +218 to +219
col_name = value.name if value.name is not None else _SERIES_UNNAMED_SENTINEL
df = value.to_frame(name=col_name)

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Fixed in commit 9d6e921. Added an explicit guard at the top of LogicalPandasSeries.python_to_storage:

if value.name == _SERIES_UNNAMED_SENTINEL:
    raise ValueError(
        f"LogicalPandasSeries: Series name {_SERIES_UNNAMED_SENTINEL!r} is "
        "reserved by orcapod for unnamed Series storage. "
        "Rename the Series before storing it."
    )

Also added test_reserved_name_raises_value_error to test_pandas_type.py to cover this path.

Comment on lines +391 to +392
col_name = obj.name if obj.name is not None else self._UNNAMED_SENTINEL
df = obj.to_frame(name=col_name)

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Fixed in commit 9d6e921. Added the same sentinel guard to PandasSeriesHandler.handle right after the isinstance check:

if obj.name == self._UNNAMED_SENTINEL:
    raise ValueError(
        f"PandasSeriesHandler: Series name {self._UNNAMED_SENTINEL!r} is "
        "reserved by orcapod for unnamed Series storage. "
        "Rename the Series before hashing it."
    )

Also added test_reserved_name_raises_value_error to test_pandas_handlers.py to verify this path.

Comment thread tests/test_hashing/test_pandas_handlers.py Outdated
Comment on lines +96 to +105
1. Wrap the Series as a single-column DataFrame: `df = s.to_frame(name=s.name or "__value__")`.
The series name is stored as the column name; the index is preserved.
2. Apply the same IPC stream serialisation as `LogicalPandasDataFrame`.

**`storage_to_python(buf, converter=None) → pd.Series`**

1. Deserialise IPC bytes → Arrow Table → `table.to_pandas()`.
2. Extract the single column: `series = df.iloc[:, 0]`. Restore the series name:
if the column name is `"__value__"`, set `series.name = None`.

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Fixed in commit 9d6e921. The spec now uses the correct sentinel "__orcapod:unnamed__" in both the python_to_storage description (steps 1–2) and the storage_to_python description (step 2). Also added a step documenting the sentinel rejection guard.

Comment on lines +108 to +118
### `PandasDataFrameHandler`

Produces a `ContentHash` via SHA-256 of the IPC stream bytes for the DataFrame.
Identical path to `python_to_storage` (using `preserve_index=True`) so the hash
input always matches what is stored in Arrow. Returns `ContentHash` directly —
same rationale as `NumpyArrayHandler`: avoids hex-expansion overhead for large frames.

### `PandasSeriesHandler`

Identical approach: wrap as a single-column DataFrame (same name-preservation logic
as `LogicalPandasSeries.python_to_storage`) → IPC bytes → SHA-256 → `ContentHash`.

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Fixed in commit 9d6e921. The Hashing Handlers section of the spec now correctly describes the actual behavior: both handlers convert to pa.Table (with preserve_index=True) and delegate to the configured Arrow hasher (defaulting to StarfixArrowHasher, which produces ContentHash(method="arrow_v0.1", ...)). The outdated SHA-256 / IPC-bytes description has been removed.

Address Copilot PR review:

- LogicalPandasSeries.python_to_storage: raise ValueError when Series.name
  equals the internal sentinel "__orcapod:unnamed__" to prevent silent
  round-trip corruption (reviewer comments 3 & 5).
- PandasSeriesHandler.handle: same guard added for consistency (comment 3).
- tests: add test_reserved_name_raises_value_error to both test_pandas_type.py
  and test_pandas_handlers.py.
- test_pandas_handlers.py: remove unused `import numpy as np` (comment 2).
- superpowers/specs/2026-07-01-pandas-native-types-design.md:
  - Correct sentinel from "__value__" to "__orcapod:unnamed__" (comment 1).
  - Update hashing section to describe Arrow hasher (arrow_v0.1) instead of
    the outdated SHA-256 description (comment 4).

PLT-1869

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@kurodo3

kurodo3 Bot commented Jul 1, 2026

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Review response — all 5 comments addressed (commit 9d6e921)

# Comment Action taken
1 Spec sentinel was "__value__" but impl uses "__orcapod:unnamed__" Updated superpowers/specs/2026-07-01-pandas-native-types-design.md to use the correct sentinel throughout
2 Unused import numpy as np in test_pandas_handlers.py Removed — numpy is used in test_pandas_type.py for dtype fixtures and was left there
3 PandasSeriesHandler would silently treat a Series named "__orcapod:unnamed__" as unnamed Added guard: raises ValueError ("reserved") immediately after the isinstance check; added test_reserved_name_raises_value_error
4 Spec described hashing as SHA-256 of IPC bytes; impl uses Arrow hasher Rewrote the Hashing Handlers section to document the actual pa.Table → StarfixArrowHasher → ContentHash(method="arrow_v0.1") path
5 LogicalPandasSeries.python_to_storage would silently corrupt a Series named with the sentinel Added identical guard before the col_name computation; added test_reserved_name_raises_value_error to test_pandas_type.py

All 71 pandas-related tests pass (including the 2 new sentinel-rejection tests). Full suite: 3972 passed, 56 skipped, 6 xfailed.

from orcapod.extension_types.protocols import TypeConverterProtocol


_SERIES_UNNAMED_SENTINEL = "__orcapod:unnamed__"

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let's not make this name anything that's orcapod specific -- something like "pandas_series_unnamed" would have been sufficient

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Fixed in commit 714647b. Changed the sentinel to "__pandas_series_unnamed__" throughout — _SERIES_UNNAMED_SENTINEL in pandas_type.py, _UNNAMED_SENTINEL in PandasSeriesHandler, all docstrings, error messages, and test assertions.

def __init__(self, arrow_hasher: "ArrowHasherProtocol | None" = None) -> None:
self._arrow_hasher = arrow_hasher

def _get_arrow_hasher(self) -> "ArrowHasherProtocol":

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I don't want this to grab anything by default -- arrow hasher must be explicitly passed in

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Fixed in commit 714647b. Removed _get_arrow_hasher() and the get_default_context() fallback from both handlers. arrow_hasher is now a required constructor parameter — no default, no global state lookup. handle() uses self._arrow_hasher.hash_table(table) directly.

def __init__(self, arrow_hasher: "ArrowHasherProtocol | None" = None) -> None:
self._arrow_hasher = arrow_hasher

def _get_arrow_hasher(self) -> "ArrowHasherProtocol":

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same as above -- do NOT grab default arrow hasher -- this must be explicitly passed in the constructor

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Fixed in commit 714647b — same as above. arrow_hasher is now required at construction; the lazy fallback is gone.

return self._get_arrow_hasher().hash_table(table)


def register_builtin_python_type_handlers(

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is this function invoked anywhere? Aren't we using context loader to take care of setting up default type handlers?

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Good catch. The function IS called in tests and by BuiltinPythonTypeHandlerRegistry, but you're right that the context loader (via v0.1.json) handles the pandas handlers independently.

Fixed in commit 714647b: removed the pandas handler registrations from register_builtin_python_type_handlers. Instead, a new PandasHandlerRegistrar class is added — it receives both registry and arrow_hasher explicitly and registers the handlers as a side-effect of construction. It's placed in v0.1.json AFTER arrow_hasher so both refs are already resolved in the loader's ref_lut. This also cleanly breaks the circular forward-reference constraint that prevented using {"_ref": "arrow_hasher"} inside the python_type_handler_registry handlers block.

Comment thread src/orcapod/contexts/data/v0.1.json Outdated
[{"_type": "pyarrow.RecordBatch"}, {"_class": "orcapod.hashing.semantic_hashing.builtin_handlers.ArrowTableHandler", "_config": {}}],
[{"_type": "numpy.ndarray"}, {"_class": "orcapod.hashing.semantic_hashing.builtin_handlers.NumpyArrayHandler", "_config": {}}]
[{"_type": "numpy.ndarray"}, {"_class": "orcapod.hashing.semantic_hashing.builtin_handlers.NumpyArrayHandler", "_config": {}}],
[{"_type": "pandas.core.frame.DataFrame"}, {"_class": "orcapod.hashing.semantic_hashing.builtin_handlers.PandasDataFrameHandler", "_config": {}}],

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this must pass in arrow hasher explicitly

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Fixed in commit 714647b. The pandas handlers are no longer in the python_type_handler_registry.handlers list at all. Instead, a new top-level entry after arrow_hasher explicitly passes both refs:

"pandas_type_handlers": {
    "_class": "...PandasHandlerRegistrar",
    "_config": {
        "registry":     {"_ref": "python_type_handler_registry"},
        "arrow_hasher": {"_ref": "arrow_hasher"}
    }
}

By the time the loader reaches this entry, both python_type_handler_registry and arrow_hasher are already in ref_lut, so the refs resolve correctly. The context schema was also updated to allow this new key.

…, add PandasHandlerRegistrar

Address eywalker PR review (PLT-1869):

Sentinel rename (comment 1):
- _SERIES_UNNAMED_SENTINEL: "__orcapod:unnamed__" → "__pandas_series_unnamed__"
- Same rename in PandasSeriesHandler._UNNAMED_SENTINEL
- Update all docstrings, error messages, and test assertions

Remove pandas handlers from register_builtin_python_type_handlers (comment 3):
- pandas DataFrame/Series are now ONLY wired via PandasHandlerRegistrar in
  the context JSON, not via the programmatic registration helper

Require explicit arrow_hasher in PandasDataFrameHandler and PandasSeriesHandler
(comments 4 & 5):
- arrow_hasher is now a required constructor parameter (no default)
- Remove _get_arrow_hasher() lazy-resolution methods that fell back to
  get_default_context() — no global state dependency
- Use self._arrow_hasher.hash_table(table) directly in handle()

Add PandasHandlerRegistrar and wire it in v0.1.json (comment 6):
- New class that receives an existing registry + explicit arrow_hasher and
  registers both pandas handlers in its constructor
- Placed in v0.1.json AFTER arrow_hasher so both _refs are resolved:
    "pandas_type_handlers": {
        "_class": "...PandasHandlerRegistrar",
        "_config": {
            "registry":     {"_ref": "python_type_handler_registry"},
            "arrow_hasher": {"_ref": "arrow_hasher"}
        }
    }
- This cleanly breaks the python_type_handler_registry → semantic_hasher →
  arrow_hasher circular dependency: pandas handlers are now registered in a
  post-arrow_hasher step rather than inside the registry block
- context_schema.json updated to allow the new pandas_type_handlers key

Tests updated:
- test_pandas_handlers.py: use module-scoped arrow_hasher fixture from
  get_default_context() to satisfy the now-required constructor arg
- test_pandas_type.py: update reserved-name sentinel string

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@kurodo3

kurodo3 Bot commented Jul 1, 2026

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Review response — eywalker round (commit 714647b)

# Comment Action
1 Sentinel shouldn't be orcapod-specific Renamed to "__pandas_series_unnamed__" everywhere (both logical type and handler)
3 Is register_builtin_python_type_handlers needed? Removed pandas handler registrations from it. Added PandasHandlerRegistrar class — a lightweight helper that receives registry + arrow_hasher and calls register() as a construction side-effect
4 PandasDataFrameHandler: no lazy default-context fallback Removed _get_arrow_hasher() method; arrow_hasher is now a required constructor param
5 PandasSeriesHandler: same Same fix
6 v0.1.json must pass arrow_hasher explicitly Removed pandas handlers from python_type_handler_registry.handlers. Added pandas_type_handlers entry after arrow_hasher in the JSON, using {"_ref": "arrow_hasher"} — both refs are in ref_lut by that point, so no forward-reference error. Context schema updated to allow the new key

Architectural note on why pandas_type_handlers is a separate entry: The context loader builds top-level components in JSON order. python_type_handler_registry must precede semantic_hasher, which must precede arrow_hasher. Placing pandas_type_handlers after all three breaks the circular dependency cleanly without touching the loader.

Full suite: 3974 passed, 56 skipped, 6 xfailed — no regressions.

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Pull request overview

Copilot reviewed 10 out of 10 changed files in this pull request and generated 7 comments.

Comment on lines +19 to +23
import pandas as pd
import polars as pl
import pyarrow as pa
import pyarrow.ipc


**Goal:** Add `pd.DataFrame` and `pd.Series` as native orcapod value types — serialised as Arrow IPC stream bytes in `large_binary` extension columns — so the `UniversalTypeConverter` no longer raises `ValueError: Unsupported Python type` for these types.

**Architecture:** Each type gets a `LogicalXxx(BaseLogicalType)` class in a new `pandas_type.py` module, following the exact structure of `numpy_type.py`. Storage uses Arrow IPC stream bytes (`preserve_index=True`) stored as `large_binary`. Content hashing uses SHA-256 of those same IPC bytes, returned directly as `ContentHash`. Both types and handlers are registered in `contexts/data/v0.1.json`.
Comment on lines +101 to +103
Series name and index are both preserved. An unnamed Series (``name=None``) uses
the sentinel column name ``"__orcapod:unnamed__"`` to distinguish it from a Series
genuinely named ``"__orcapod:unnamed__"`` (the latter would be a bug in user code).
from orcapod.extension_types.protocols import TypeConverterProtocol


_SERIES_UNNAMED_SENTINEL = "__orcapod:unnamed__"
## Summary

- Adds `LogicalPandasDataFrame` and `LogicalPandasSeries` to `extension_types/pandas_type.py`, mapping `pd.DataFrame` / `pd.Series` to Arrow `large_binary` via Arrow IPC stream bytes with `preserve_index=True`
- Adds `PandasDataFrameHandler` and `PandasSeriesHandler` in `builtin_handlers.py` for SHA-256 content hashing
Comment on lines +691 to +695
class PandasDataFrameHandler:
"""Hasher for ``pd.DataFrame`` — content hash via SHA-256 of Arrow IPC stream bytes.

Serialises the DataFrame to Arrow IPC stream format (with ``preserve_index=True``)
and returns a ``ContentHash`` produced by SHA-256 of those bytes. The serialisation
Comment on lines +901 to +909
- [ ] **Step 5.4: Register both handlers in `v0.1.json`**

In `src/orcapod/contexts/data/v0.1.json`, find the `python_type_handler_registry` handlers array and append after the numpy handler entry:

```json
[{"_type": "numpy.ndarray"}, {"_class": "orcapod.hashing.semantic_hashing.builtin_handlers.NumpyArrayHandler", "_config": {}}],
[{"_type": "pandas.core.frame.DataFrame"}, {"_class": "orcapod.hashing.semantic_hashing.builtin_handlers.PandasDataFrameHandler", "_config": {}}],
[{"_type": "pandas.core.series.Series"}, {"_class": "orcapod.hashing.semantic_hashing.builtin_handlers.PandasSeriesHandler", "_config": {}}]
```
…y arrow_hasher

Replace the PandasHandlerRegistrar side-effect pattern with the same lazy
_get_arrow_hasher() resolution already used by ArrowTableHandler. Both
PandasDataFrameHandler and PandasSeriesHandler now accept arrow_hasher=None
and fall back to get_default_context().arrow_hasher at call time, breaking
the construction-time circular dependency without a separate registrar class.

Register both handlers directly in v0.1.json's python_type_handler_registry
handlers list with _config: {} alongside all other handlers. Remove the
pandas_type_handlers top-level entry and its schema definition from
context_schema.json. Also register both handlers in
register_builtin_python_type_handlers() for programmatic use.

Co-Authored-By: Claude Sonnet 4.6 <noreply@anthropic.com>
@eywalker eywalker merged commit 074a2ae into main Jul 1, 2026
11 checks passed
@eywalker eywalker deleted the eywalker/plt-1869-orcapod-support-pandasdataframe-as-a-native-value-type branch July 1, 2026 22:16
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