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v3.0.7 Updated data and fixes

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@KeithKelleher KeithKelleher released this 15 May 13:45
· 11 commits to master since this release
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Update to Sqlite DB version 3.0.7 (03/10/2025):

  • New data sources
    • PFOCR - v20240901 (2024-09-01)
    • RefMet IDs - v20250305 (2025-03-05)
  • Updated data sources
    • Reactome - v89 (2024-06)
    • WikiPathways - v20240810 (2024-08-10)
    • ChEBI - Release 236 (2024-07-27)
    • Lipid Maps - Release (2024-08-19)
    • Rhea - Release 134 (2024-07-24)
  • Re-harmonized and re-built database
    • with updated curation_mapping_issues_list.txt

Including fixes from version 2.6.2

  • Updated parsing code for WikiPathways data
  • Fixed QC checks for inconsistent molecular weights, and updated curations in "curation_mapping_issues_list.txt"
  • Added a field for the single best common name for genes and metabolites