Singularity compatibility fixes#283

Merged

tsibley merged 10 commits intomasterfrom

trs/singularity/compat

May 26, 2023

Commits on May 24, 2023

shell: Note which runtime is being entered
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Commits on May 25, 2023

debug: Emit log lines for calls to capture_output() and exec_or_return()
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runner.singularity: Extend commentary on isolation flags compatibility
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runner.singularity: Check for minimum Singularity version during check-setup
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runner.singularity: Allow writes to HOME on the container filesystem
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runner.singularity: Restore our customized shell prompt on Singularity ≥3.5.3
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runner.singularity: Avoid pre-exec evaluation of entrypoint command line…
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dev: Add type stubs for boto3 and botocore
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dev: Work around some mypy limitation when type checking a lambda
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Commits on May 26, 2023

CHANGES: Document the Singularity (and Conda) fixes since the last release
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