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CI: Sync pathogen repo list#283

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victorlin merged 1 commit intomasterfrom
victorlin/update-ci
Mar 16, 2026
Merged

CI: Sync pathogen repo list#283
victorlin merged 1 commit intomasterfrom
victorlin/update-ci

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@victorlin victorlin commented Mar 12, 2026

Generated programmatically using:

gh api --paginate "search/code?q=org:nextstrain+-repo:nextstrain/pathogen-repo-guide+path:phylogenetic/build-configs/ci+filename:config.yaml" | \
jq -r '.items[] | "          - \(.repository.name)"' | \
sort -f

Motivated by nextstrain/nipah#22

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Generated programmatically using:

    gh api --paginate "search/code?q=org:nextstrain+-repo:nextstrain/pathogen-repo-guide+path:phylogenetic/build-configs/ci+filename:config.yaml" | \
    jq -r '.items[] | "          - \(.repository.name)"' | \
    sort -f
@victorlin victorlin self-assigned this Mar 12, 2026
@victorlin victorlin merged commit d87a4d8 into master Mar 16, 2026
143 of 147 checks passed
@victorlin victorlin deleted the victorlin/update-ci branch March 16, 2026 16:50
@victorlin victorlin linked an issue Mar 16, 2026 that may be closed by this pull request
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CI: Add new core pathogens to test-pathogen-repo-ci

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