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Sprint22 matwerk #248
…d on feedback from @RubelMozumder, @lukaspie, as well as @sanbrock
Application definition for XPS
…or_circuits Cleaned the too many base classes for circuits and cleaned base classes for describing a computer
Make geometries and sourceTYPE recommended in NXxps
change docs in NXcollectioncolumn
…ses by definitions in appdefs
…NXms with NXmicrostructure to avoid confusing the symbol convention with mass spectrometry as the abbreviation NXms may suggest
…con and eventually make this NXmicrostructure
* update NXxrd.yaml * update NXxrd.nxdl
NXsource: type extended, previous_source added
Suggestions from Lukas
small updates for XPS peak fitting
use same CI/CD like nexusformat/definitions
* First final draft for application definiton NXsts, NXstm, NXaf, NXspm and base classes NXlockin, NXbias_spectroscopy, cantilever_spm, NXbias_sweep, NXpiezo_config_spm, NXpositioner_spm, NXscan_control, NXpiezoelectric_material and NXrcs. Finish review comments from Lev. * Remove SPM folder. * Remove SPM folder. Revert "Remove SPM folder." This reverts commit 3aeb39e. PR review from Lukas! Delete unnecessary files. Revert "Delete unnecessary files." This reverts commit 317a367. Include the default key attribute on entry and include NXhistory under the NXsample for verbose purpose. * Review from Tamash (#303) * space. * Modified some descriptions trying to clarify the meaning of the elements. Please check them! Modified:Update NXafm.yaml * NXbias_spectroscopy.yaml * Update NXscan.yaml I just added a slight clarification what we mean under the word scan. However, it makes me wonder whether this should be more a base class than an application definition. And whether the control parameter set should be only positional. So, I have some doubts here... * Update NXcantilever_spm.yaml added some explanation and clarification to the cantilever properties and what are the driving details of cantilever oscillations * Update NXcircuit.yaml minor changes to allow for multichannel boards, e.g. 4 or 16 channel A/D converters or amplifiers * Update NXlockin.yaml Minor changes in documentation, removed some redundant information on the demodulated signal. * Update NXpiezo_config_spm.yaml minimal changes in docstrings * Update NXpositioner_spm.yaml minor correction, the Z positioner has no idea where the sample is, so sample - probe distance is unknown at this point * Update NXscan_control.yaml some minor comment changes * Generated nxdl files. * Revert "Update NXscan.yaml" This reverts commit 3f376f0. This file is covered by #304 #304 --------- Co-authored-by: T. Haraszti <haraszti@dwi.rwth-aachen.de> Rename lockin_current_flip_number to loockin_current_flip_sign. add NXidentifier in NXsensor_scan. Delete unnecessary file. Revert "Delete unnecessary file." This reverts commit 8c6b03c. Preparation for example in nomad. Corrected typo in heterodyne word Update NXlockin.yaml Minor fix. * Remove redundant files.
Remove the `default` attribute from the base class NXpositioner.
* fix calibration_time in yaml. * fix calibration_time in nxdl.xml.
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