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nf-core/bcellmagic version 1.1.0 "Wingardium Leviosa"

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@ggabernet ggabernet released this 08 Nov 13:12
· 2503 commits to master since this release
1.1.0
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Version 1.1.0 adds functionality to the pipeline. The main added features of this release are the calculation of the B-cell clones in a patient-wide way and the downstream repertoire analysis.

Added

  • Merging all the repertoires from the same patient
  • Added clone calculation per patient: --set_cluster_thresholdand cluster_threshold parameters.
  • Added downstream analysis processes: diversity, abundance, mutational load, Ig type and gene distribution
  • Parsing logs for all processes
  • FastQC and multiQC processes
  • Option for providing Illumina index and UMI as part of R1
  • Update template to tools 1.7

Fixed

  • #25 - Improved documentation
  • #27 - Added FastQC and MultiQC processes
  • #21 - Added log parsing

Dependencies

  • Update Nextflow 0.32.0 -> 19.10.0
  • Added several requirements for downstream analysis.

Deprecated

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