Process NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC terminated with an error exit status #428
Description
Description of the bug
Hi, I met an error while running v2.1.0, which I did not meet with v2.0.0. Could you fix it or help me how to solve it? It seems like caused by temporary directory space issue, which I actually have enough on that path.
Below is the actual error code. Thanks.
Command used and terminal output
Error code :
ERROR ~ Error executing process > 'NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC'
Caused by:
Process NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC terminated with an error exit status (1)
Command executed:
multiqc
-f
.
cat <<-END_VERSIONS > versions.yml
"NFCORE_CHIPSEQ:CHIPSEQ:MULTIQC":
multiqc: $( multiqc --version | sed -e "s/multiqc, version //g" )
END_VERSIONS
Command exit status:
1
Command output:
(empty)
Command error:
^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.11/site-packages/kaleido/scopes/base.py", line 293, in _perform_transform
self._ensure_kaleido()
File "/usr/local/lib/python3.11/site-packages/kaleido/scopes/base.py", line 198, in _ensure_kaleido
raise ValueError(message)
ValueError: Failed to start Kaleido subprocess. Error stream:
[1017/024435.303801:WARNING:resource_bundle.cc(431)] locale_file_path.empty() for locale
[1017/024435.339157:WARNING:resource_bundle.cc(431)] locale_file_path.empty() for locale
[1017/024435.340657:WARNING:resource_bundle.cc(431)] locale_file_path.empty() for locale
[1017/024435.379947:WARNING:discardable_shared_memory_manager.cc(194)] Less than 64MB of free space in temporary directory for shared memory files: 0
[1017/024435.528270:ERROR:platform_shared_memory_region_posix.cc(250)] Creating shared memory in /scr1/users/ohs5/tmp/.org.chromium.Chromium.r9hrLo failed: No such file or directory (2)
[1017/024435.528312:ERROR:platform_shared_memory_region_posix.cc(253)] Unable to access(W_OK|X_OK) /scr1/users/ohs5/tmp: No such file or directory (2)
Relevant files
No response
System information
No response