Add tower.yml file with list of pertinent Reports to display in Tower #306
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drpatelh
commented
Sep 16, 2022
| $args | ||
| find ./ -type f -name "*.txt" -exec cat {} \\; | cat $mqc_header - > ${prefix}.summary_mqc.tsv | ||
| find ./ -type f -name "*summary.txt" -exec cat {} \\; | cat $mqc_header - > ${prefix}.summary_mqc.tsv |
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Fixed bug noticed whilst testing on Azure where MultiQC sections were being rendered in the wrong order in the report. Still need to test but I suspect it is happening due to this line. Basically the script is pickup up all files ending in .txt because they are copied into the work directory and hence appending the contents to summary_mqc.tsv which then doesn't render in MultiQC properly.
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Great catch. I can see the *peaks.annotatePeaks.txt files in the working directory which would have been picked up in error!
robsyme
approved these changes
Sep 16, 2022
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