Update nf-test snapshot

[BenjaminWehnert1008]

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
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[BenjaminWehnert1008]

@mashehu I've updated the test snapshot, but nf-test still fails, do you have an idea why and also how to proceed? Thanks!

[mashehu]

looks like the test produces more files in the CI then you currently have. How did you update your snapshots?

[BenjaminWehnert1008]

looks like the test produces more files in the CI then you currently have. How did you update your snapshots?

nf-test test tests/default.nf.test --profile docker --update-snapshot

[mashehu]

Can you try it with nf-test test tests/default.nf.test --profile +docker --update-snapshot otherwise the test profile might be overwritten https://www.nf-test.com/docs/configuration/#managing-profiles

[BenjaminWehnert1008]

@mashehu, it seems to not fully resolve it...

[mashehu]

I excluded a bit more unstable R files from the snapshot (should just check names for them). Can you try to recreate the snapshot on your side again @BenjaminWehnert1008 ?

[BenjaminWehnert1008]

@mashehu @MaximilianStammnitz after further expanding the ignore file, the test is now running without any failures. Is it ready to be merged? And what is the next step? Thanks! :)

[MaximilianStammnitz]

@mashehu @MaximilianStammnitz after further expanding the ignore file, the test is now running without any failures. Is it ready to be merged? And what is the next step? Thanks! :)

amazing @BenjaminWehnert1008, I hope this looks good enough for the merge !!

[mashehu]

hmm, tsv files usually are quite stable. any clue what is different on the different platforms here?

[BenjaminWehnert1008]

@mashehu yes, this is weird... I'm also wondering. The edgeR and limma outputs contain heavily calculated stats (logFoldChange, PValue, etc.) with up to 14+ decimal places - maybe they're different because of differences in rounding?

[mashehu]

ah, that could be the case.
can you maybe then use https://github.com/lukfor/nft-csv to get at least a partial snapshot instead of ignoring them completely?