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busco/busco: pin numpy version in module#10372

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dialvarezs merged 2 commits into
nf-core:masterfrom
dialvarezs:update-busco
Mar 10, 2026
Merged

busco/busco: pin numpy version in module#10372
dialvarezs merged 2 commits into
nf-core:masterfrom
dialvarezs:update-busco

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This pins the numpy version on the busco module, due to a breaking behaviour we have seen recently in mag. This was solved by pining the old version to 2.3

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
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  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
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@dialvarezs dialvarezs added this pull request to the merge queue Mar 10, 2026
Merged via the queue into nf-core:master with commit 25e280b Mar 10, 2026
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@dialvarezs dialvarezs deleted the update-busco branch March 10, 2026 10:10
@mashehu mashehu mentioned this pull request Jun 8, 2026
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2 participants