Skip to content

Add gcta/fastgwa module#11000

Open
lyh970817 wants to merge 10 commits intonf-core:masterfrom
lyh970817:modules/gcta-fastgwa-create
Open

Add gcta/fastgwa module#11000
lyh970817 wants to merge 10 commits intonf-core:masterfrom
lyh970817:modules/gcta-fastgwa-create

Conversation

@lyh970817
Copy link

@lyh970817 lyh970817 commented Mar 21, 2026

This PR adds the gcta/fastgwa module, which runs GCTA fastGWA for quantitative and binary phenotypes from PLINK genotype inputs and sparse GRM inputs.

Merge dependency: #11002.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • nf-core modules test gcta/fastgwa --profile docker
  • nf-core modules test gcta/fastgwa --profile singularity
  • nf-core modules test gcta/fastgwa --profile conda

@lyh970817 lyh970817 mentioned this pull request Mar 21, 2026
17 tasks
@lyh970817 lyh970817 force-pushed the modules/gcta-fastgwa-create branch from 55efa1d to 4ad44fa Compare March 21, 2026 12:53
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant