Skip to content

Add regenie/step2 module#11009

Open
lyh970817 wants to merge 2 commits intonf-core:masterfrom
lyh970817:modules/regenie-step2-create
Open

Add regenie/step2 module#11009
lyh970817 wants to merge 2 commits intonf-core:masterfrom
lyh970817:modules/regenie-step2-create

Conversation

@lyh970817
Copy link

This PR adds the regenie/step2 module, which runs REGENIE Step 2 association testing from PLINK genotype inputs and Step 1 predictions.

Merge dependency: #11008.

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • nf-core modules test regenie/step2 --profile docker
  • nf-core modules test regenie/step2 --profile singularity
  • nf-core modules test regenie/step2 --profile conda

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant