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Bump software versions for minimap2 modules#11280

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sainsachiko merged 1 commit intonf-core:masterfrom
sainsachiko:bump-version-minimap2
Apr 23, 2026
Merged

Bump software versions for minimap2 modules#11280
sainsachiko merged 1 commit intonf-core:masterfrom
sainsachiko:bump-version-minimap2

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Bump software versions for minimap2 modules:

  • minimap2 2.30
  • samtools to 1.23.1

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Broadcast software version numbers to topic: versions - See version_topics
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@sainsachiko sainsachiko requested a review from muffato April 23, 2026 16:44
@sainsachiko sainsachiko added this pull request to the merge queue Apr 23, 2026
Merged via the queue into nf-core:master with commit 135d883 Apr 23, 2026
62 checks passed
@sainsachiko sainsachiko deleted the bump-version-minimap2 branch April 23, 2026 16:55
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2 participants