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Update MLST from 2.23 to 2.25 #9604

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SPPearce merged 3 commits into from
Dec 23, 2025
Merged

Update MLST from 2.23 to 2.25 #9604

SPPearce merged 3 commits into from
Dec 23, 2025

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@svermai svermai commented Dec 22, 2025 •
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PR checklist

Update module: Bump MLST version from 2.23 --> 2.25
Closes #9601

  • This comment contains a description of changes (with reason).
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test mlst --profile docker
      • nf-core modules test mlst --profile singularity
      • nf-core modules test mlst --profile conda

@SPPearce SPPearce added this pull request to the merge queue Dec 23, 2025
Merged via the queue into nf-core:master with commit 49bdeef Dec 23, 2025
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@svermai svermai mentioned this pull request Dec 23, 2025
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georgiakes pushed a commit to georgiakes/modules that referenced this pull request Dec 30, 2025
@svermai @georgiakes
Update MLST from 2.23 to 2.25 (nf-core#9604)
1c13a98 
* Update MLST from 2.23 to 2.25

* test: update snapshots for mlst 2.25

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Co-authored-by: Subham Verma <subhamverma@S.local>
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@SPPearce SPPearce SPPearce approved these changes

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Update module: Bump MLST version from 2.23 --> 2.25

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@svermai @SPPearce