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Fix ci.yml #200

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Merged
luisas merged 3 commits into from
Feb 17, 2025
Merged

Fix ci.yml #200

luisas merged 3 commits into from
Feb 17, 2025

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@luisas
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@luisas luisas commented Feb 17, 2025 •
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Just removes the conda from the stub (i forgot to do it before)

And fixes output.md

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs
  • If necessary, also make a PR on the nf-core/multiplesequencealign branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Check for unexpected warnings in debug mode (nextflow run . -profile debug,test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@luisas luisas changed the base branch from master to dev February 17, 2025 10:29
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github-actions bot commented Feb 17, 2025

This PR is against the master branch ❌

  • Do not close this PR
  • Click Edit and change the base to dev
  • This CI test will remain failed until you push a new commit

Hi @luisas,

It looks like this pull-request is has been made against the luisas/multiplesequencealign master branch.
The master branch on nf-core repositories should always contain code from the latest release.
Because of this, PRs to master are only allowed if they come from the luisas/multiplesequencealign dev branch.

You do not need to close this PR, you can change the target branch to dev by clicking the "Edit" button at the top of this page.
Note that even after this, the test will continue to show as failing until you push a new commit.

Thanks again for your contribution!

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github-actions bot commented Feb 17, 2025 •
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nf-core pipelines lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 5eb9a4f

+| ✅ 211 tests passed       |+
#| ❔   6 tests were ignored |#
!| ❗   1 tests had warnings |!
Details

❗ Test warnings:

❔ Tests ignored:

✅ Tests passed:

Run details

  • nf-core/tools version 3.2.0
  • Run at 2025-02-17 11:08:13

JoseEspinosa
JoseEspinosa approved these changes Feb 17, 2025
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LGTM 🚀

@luisas luisas merged commit 75d129f into nf-core:dev Feb 17, 2025
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@JoseEspinosa JoseEspinosa JoseEspinosa approved these changes

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@luisas @JoseEspinosa