-
Notifications
You must be signed in to change notification settings - Fork 27
Closed
Labels
enhancementNew feature or requestNew feature or request
Milestone
Description
Description of feature
Validation of input FASTQ files should be improved:
- certain unsupported samplesheet FASTQ input rows produce non-descript errors
- see here for an example: https://nfcore.slack.com/archives/C04CQ1LK7U1/p1724454431405079
- all file inputs including FASTQ should be init as Nextflow.File objects and checked to exist (w/ stub mode exception):
Lines 127 to 133 in 4227bc1
| meta_sample[filetype_enum][fastq_key] = ['fwd': fwd, 'rev': rev] | |
| } else { | |
| meta_sample[filetype_enum] = Utils.getFileObject(it.filepath) | |
This work may also relate to:
Reactions are currently unavailable
Metadata
Metadata
Assignees
Labels
enhancementNew feature or requestNew feature or request