Release v1.1.0 by zachary-foster · Pull Request #188 · nf-core/pathogensurveillance

zachary-foster · 2026-01-26T18:43:42Z

In progress

Important! Template update for nf-core/tools v3.3.2

;

…e into 1.1.0dev

1.1.0dev

github-actions · 2026-01-26T18:46:12Z

`nf-core pipelines lint` overall result: Passed ✅ ⚠️

Posted for pipeline commit f9a0d73

+| ✅ 261 tests passed       |+
#| ❔   7 tests were ignored |#
!| ❗   1 tests had warnings |!

Details

❗ Test warnings:

included_configs - Pipeline config does not include custom configs. Please add the includeConfig line.

❔ Tests ignored:

nf_test_content - nf_test_content
files_unchanged - File ignored due to lint config: LICENSE or LICENSE.md or LICENCE or LICENCE.md
files_unchanged - File ignored due to lint config: .github/PULL_REQUEST_TEMPLATE.md
files_unchanged - File ignored due to lint config: assets/nf-core-pathogensurveillance_logo_light.png
pipeline_todos - pipeline_todos
pipeline_if_empty_null - pipeline_if_empty_null
template_strings - template_strings

✅ Tests passed:

files_exist - File found: .gitattributes
files_exist - File found: .gitignore
files_exist - File found: .nf-core.yml
files_exist - File found: .prettierignore
files_exist - File found: .prettierrc.yml
files_exist - File found: CHANGELOG.md
files_exist - File found: CITATIONS.md
files_exist - File found: CODE_OF_CONDUCT.md
files_exist - File found: LICENSE or LICENSE.md or LICENCE or LICENCE.md
files_exist - File found: nextflow_schema.json
files_exist - File found: nextflow.config
files_exist - File found: README.md
files_exist - File found: .github/.dockstore.yml
files_exist - File found: .github/CONTRIBUTING.md
files_exist - File found: .github/ISSUE_TEMPLATE/bug_report.yml
files_exist - File found: .github/ISSUE_TEMPLATE/config.yml
files_exist - File found: .github/ISSUE_TEMPLATE/feature_request.yml
files_exist - File found: .github/PULL_REQUEST_TEMPLATE.md
files_exist - File found: .github/workflows/branch.yml
files_exist - File found: .github/workflows/nf-test.yml
files_exist - File found: .github/actions/get-shards/action.yml
files_exist - File found: .github/actions/nf-test/action.yml
files_exist - File found: .github/workflows/linting_comment.yml
files_exist - File found: .github/workflows/linting.yml
files_exist - File found: assets/email_template.html
files_exist - File found: assets/email_template.txt
files_exist - File found: assets/sendmail_template.txt
files_exist - File found: assets/nf-core-pathogensurveillance_logo_light.png
files_exist - File found: conf/modules.config
files_exist - File found: conf/test.config
files_exist - File found: conf/test_full.config
files_exist - File found: docs/images/nf-core-pathogensurveillance_logo_light.png
files_exist - File found: docs/images/nf-core-pathogensurveillance_logo_dark.png
files_exist - File found: docs/output.md
files_exist - File found: docs/README.md
files_exist - File found: docs/README.md
files_exist - File found: docs/usage.md
files_exist - File found: nf-test.config
files_exist - File found: tests/default.nf.test
files_exist - File found: main.nf
files_exist - File found: assets/multiqc_config.yml
files_exist - File found: conf/base.config
files_exist - File found: conf/igenomes.config
files_exist - File found: conf/igenomes_ignored.config
files_exist - File found: .github/workflows/awstest.yml
files_exist - File found: .github/workflows/awsfulltest.yml
files_exist - File found: modules.json
files_exist - File found: ro-crate-metadata.json
files_exist - File not found check: .github/ISSUE_TEMPLATE/bug_report.md
files_exist - File not found check: .github/ISSUE_TEMPLATE/feature_request.md
files_exist - File not found check: .github/workflows/push_dockerhub.yml
files_exist - File not found check: .markdownlint.yml
files_exist - File not found check: .nf-core.yaml
files_exist - File not found check: .yamllint.yml
files_exist - File not found check: bin/markdown_to_html.r
files_exist - File not found check: conf/aws.config
files_exist - File not found check: docs/images/nf-core-pathogensurveillance_logo.png
files_exist - File not found check: lib/Checks.groovy
files_exist - File not found check: lib/Completion.groovy
files_exist - File not found check: lib/NfcoreTemplate.groovy
files_exist - File not found check: lib/Utils.groovy
files_exist - File not found check: lib/Workflow.groovy
files_exist - File not found check: lib/WorkflowMain.groovy
files_exist - File not found check: lib/WorkflowPathogensurveillance.groovy
files_exist - File not found check: parameters.settings.json
files_exist - File not found check: pipeline_template.yml
files_exist - File not found check: Singularity
files_exist - File not found check: lib/nfcore_external_java_deps.jar
files_exist - File not found check: .travis.yml
nextflow_config - Found nf-schema plugin
nextflow_config - Config variable found: manifest.name
nextflow_config - Config variable found: manifest.nextflowVersion
nextflow_config - Config variable found: manifest.description
nextflow_config - Config variable found: manifest.version
nextflow_config - Config variable found: manifest.homePage
nextflow_config - Config variable found: timeline.enabled
nextflow_config - Config variable found: trace.enabled
nextflow_config - Config variable found: report.enabled
nextflow_config - Config variable found: dag.enabled
nextflow_config - Config variable found: process.cpus
nextflow_config - Config variable found: process.memory
nextflow_config - Config variable found: process.time
nextflow_config - Config variable found: params.outdir
nextflow_config - Config variable found: params.input
nextflow_config - Config variable found: manifest.mainScript
nextflow_config - Config variable found: timeline.file
nextflow_config - Config variable found: trace.file
nextflow_config - Config variable found: report.file
nextflow_config - Config variable found: dag.file
nextflow_config - Config variable (correctly) not found: params.nf_required_version
nextflow_config - Config variable (correctly) not found: params.container
nextflow_config - Config variable (correctly) not found: params.singleEnd
nextflow_config - Config variable (correctly) not found: params.igenomesIgnore
nextflow_config - Config variable (correctly) not found: params.name
nextflow_config - Config variable (correctly) not found: params.enable_conda
nextflow_config - Config variable (correctly) not found: params.max_cpus
nextflow_config - Config variable (correctly) not found: params.max_memory
nextflow_config - Config variable (correctly) not found: params.max_time
nextflow_config - Config variable (correctly) not found: params.validationFailUnrecognisedParams
nextflow_config - Config variable (correctly) not found: params.validationLenientMode
nextflow_config - Config variable (correctly) not found: params.validationSchemaIgnoreParams
nextflow_config - Config variable (correctly) not found: params.validationShowHiddenParams
nextflow_config - Config variable (correctly) not found: validation.failUnrecognisedParams
nextflow_config - Config variable (correctly) not found: validation.failUnrecognisedHeaders
nextflow_config - Config timeline.enabled had correct value: true
nextflow_config - Config report.enabled had correct value: true
nextflow_config - Config trace.enabled had correct value: true
nextflow_config - Config dag.enabled had correct value: true
nextflow_config - Config manifest.name began with nf-core/
nextflow_config - Config variable manifest.homePage began with https://github.com/nf-core/
nextflow_config - Config dag.file ended with .html
nextflow_config - Config variable manifest.nextflowVersion started with >= or !>=
nextflow_config - Config manifest.version does not contain dev for release: 1.1.0
nextflow_config - Config params.custom_config_version is set to master
nextflow_config - Config params.custom_config_base is set to https://raw.githubusercontent.com/nf-core/configs/master
nextflow_config - Lines for loading custom profiles found
nextflow_config - nextflow.config contains configuration profile test
nextflow_config - Config default value correct: params.data_dir= path_surveil_data
nextflow_config - Config default value correct: params.download_bakta_db= true
nextflow_config - Config default value correct: params.bakta_db_type= light
nextflow_config - Config default value correct: params.max_samples= 1000
nextflow_config - Config default value correct: params.max_depth= 100.0
nextflow_config - Config default value correct: params.only_latin_binomial_refs= false
nextflow_config - Config default value correct: params.allow_non_refseq= false
nextflow_config - Config default value correct: params.allow_unannotated= false
nextflow_config - Config default value correct: params.allow_atypical_refs= false
nextflow_config - Config default value correct: params.n_ref_strains= 5
nextflow_config - Config default value correct: params.n_ref_species= 20
nextflow_config - Config default value correct: params.n_ref_genera= 20
nextflow_config - Config default value correct: params.n_ref_closest= 2.0
nextflow_config - Config default value correct: params.n_ref_closest_named= 1.0
nextflow_config - Config default value correct: params.n_ref_context= 5.0
nextflow_config - Config default value correct: params.phylo_min_genes= 10.0
nextflow_config - Config default value correct: params.phylo_max_genes= 500.0
nextflow_config - Config default value correct: params.ref_min_ani= 0.95
nextflow_config - Config default value correct: params.min_bases_to_assemble= 100000.0
nextflow_config - Config default value correct: params.max_variants= 100000.0
nextflow_config - Config default value correct: params.cpu_scale= 1.0
nextflow_config - Config default value correct: params.skip_core_phylogeny= false
nextflow_config - Config default value correct: params.custom_config_version= master
nextflow_config - Config default value correct: params.custom_config_base= https://raw.githubusercontent.com/nf-core/configs/master
nextflow_config - Config default value correct: params.publish_dir_mode= symlink
nextflow_config - Config default value correct: params.max_multiqc_email_size= 25.MB
nextflow_config - Config default value correct: params.validate_params= true
nextflow_config - Config default value correct: params.pipelines_testdata_base_path= https://raw.githubusercontent.com/nf-core/test-datasets/refs/heads/pathogensurveillance/
files_unchanged - .gitattributes matches the template
files_unchanged - .prettierrc.yml matches the template
files_unchanged - CODE_OF_CONDUCT.md matches the template
files_unchanged - .github/.dockstore.yml matches the template
files_unchanged - .github/CONTRIBUTING.md matches the template
files_unchanged - .github/ISSUE_TEMPLATE/bug_report.yml matches the template
files_unchanged - .github/ISSUE_TEMPLATE/config.yml matches the template
files_unchanged - .github/ISSUE_TEMPLATE/feature_request.yml matches the template
files_unchanged - .github/workflows/branch.yml matches the template
files_unchanged - .github/workflows/linting_comment.yml matches the template
files_unchanged - .github/workflows/linting.yml matches the template
files_unchanged - assets/email_template.html matches the template
files_unchanged - assets/email_template.txt matches the template
files_unchanged - assets/sendmail_template.txt matches the template
files_unchanged - docs/images/nf-core-pathogensurveillance_logo_light.png matches the template
files_unchanged - docs/images/nf-core-pathogensurveillance_logo_dark.png matches the template
files_unchanged - docs/README.md matches the template
files_unchanged - .gitignore matches the template
files_unchanged - .prettierignore matches the template
actions_nf_test - '.github/workflows/nf-test.yml' is triggered on expected events
actions_nf_test - '.github/workflows/nf-test.yml' checks minimum NF version
actions_awstest - '.github/workflows/awstest.yml' is triggered correctly
actions_awsfulltest - .github/workflows/awsfulltest.yml is triggered correctly
actions_awsfulltest - .github/workflows/awsfulltest.yml does not use -profile test
readme - README Nextflow minimum version badge matched config. Badge: 25.04.6, Config: 25.04.6
readme - README nf-core template version badge found.
readme - README Zenodo placeholder was replaced with DOI.
plugin_includes - No wrong validation plugin imports have been found
pipeline_name_conventions - Name adheres to nf-core convention
schema_lint - Schema lint passed
schema_lint - Schema title + description lint passed
schema_lint - Input mimetype lint passed: 'text/tsv'
schema_params - Schema matched params returned from nextflow config
system_exit - No System.exit calls found
actions_schema_validation - Workflow validation passed: branch.yml
actions_schema_validation - Workflow validation passed: fix_linting.yml
actions_schema_validation - Workflow validation passed: clean-up.yml
actions_schema_validation - Workflow validation passed: linting.yml
actions_schema_validation - Workflow validation passed: awsfulltest.yml
actions_schema_validation - Workflow validation passed: template-version-comment.yml
actions_schema_validation - Workflow validation passed: nf-test.yml
actions_schema_validation - Workflow validation passed: download_pipeline.yml
actions_schema_validation - Workflow validation passed: awstest.yml
actions_schema_validation - Workflow validation passed: release-announcements.yml
actions_schema_validation - Workflow validation passed: linting_comment.yml
merge_markers - No merge markers found in pipeline files
modules_json - Only installed modules found in modules.json
multiqc_config - assets/multiqc_config.yml found and not ignored.
multiqc_config - assets/multiqc_config.yml contains report_section_order
multiqc_config - assets/multiqc_config.yml contains export_plots
multiqc_config - assets/multiqc_config.yml contains report_comment
multiqc_config - assets/multiqc_config.yml follows the ordering scheme of the minimally required plugins.
multiqc_config - assets/multiqc_config.yml contains a matching 'report_comment'.
multiqc_config - assets/multiqc_config.yml contains 'export_plots: true'.
modules_structure - modules directory structure is correct 'modules/nf-core/TOOL/SUBTOOL'
local_component_structure - local subworkflows directory structure is correct 'subworkflows/local/TOOL/SUBTOOL'
base_config - conf/base.config found and not ignored.
modules_config - conf/modules.config found and not ignored.
modules_config - ASSIGN_BUSCO_REFERENCES found in conf/modules.config and Nextflow scripts.
modules_config - ASSIGN_CORE_REFERENCES found in conf/modules.config and Nextflow scripts.
modules_config - ASSIGN_MAPPING_REFERENCE found in conf/modules.config and Nextflow scripts.
modules_config - BAKTA_BAKTA found in conf/modules.config and Nextflow scripts.
modules_config - BAKTA_BAKTADBDOWNLOAD found in conf/modules.config and Nextflow scripts.
modules_config - BBMAP_SENDSKETCH found in conf/modules.config and Nextflow scripts.
modules_config - BUSCO_BUSCO found in conf/modules.config and Nextflow scripts.
modules_config - BUSCO_DOWNLOAD found in conf/modules.config and Nextflow scripts.
modules_config - BWA_INDEX found in conf/modules.config and Nextflow scripts.
modules_config - BWA_MEM found in conf/modules.config and Nextflow scripts.
modules_config - CALCULATE_POCP found in conf/modules.config and Nextflow scripts.
modules_config - DOWNLOAD_ASSEMBLIES found in conf/modules.config and Nextflow scripts.
modules_config - EXTRACT_FEATURE_SEQUENCES found in conf/modules.config and Nextflow scripts.
modules_config - FASTP found in conf/modules.config and Nextflow scripts.
modules_config - FASTQC found in conf/modules.config and Nextflow scripts.
modules_config - FIND_ASSEMBLIES found in conf/modules.config and Nextflow scripts.
modules_config - FLYE found in conf/modules.config and Nextflow scripts.
modules_config - GATK4_VARIANTFILTRATION found in conf/modules.config and Nextflow scripts.
modules_config - GRAPHTYPER_GENOTYPE found in conf/modules.config and Nextflow scripts.
modules_config - GRAPHTYPER_VCFCONCATENATE found in conf/modules.config and Nextflow scripts.
modules_config - INITIAL_CLASSIFICATION found in conf/modules.config and Nextflow scripts.
modules_config - IQTREE_BUSCO found in conf/modules.config and Nextflow scripts.
modules_config - IQTREE_CORE found in conf/modules.config and Nextflow scripts.
modules_config - IQTREE_SNP found in conf/modules.config and Nextflow scripts.
modules_config - MAFFT_BUSCO found in conf/modules.config and Nextflow scripts.
modules_config - MAFFT_CORE found in conf/modules.config and Nextflow scripts.
modules_config - MAIN_REPORT found in conf/modules.config and Nextflow scripts.
modules_config - MAKE_GFF_WITH_FASTA found in conf/modules.config and Nextflow scripts.
modules_config - MULTIQC found in conf/modules.config and Nextflow scripts.
modules_config - NANOPLOT found in conf/modules.config and Nextflow scripts.
modules_config - PARSE_ASSEMBLIES found in conf/modules.config and Nextflow scripts.
modules_config - PICARD_CREATESEQUENCEDICTIONARY found in conf/modules.config and Nextflow scripts.
modules_config - PICARD_FORMAT found in conf/modules.config and Nextflow scripts.
modules_config - PICK_ASSEMBLIES found in conf/modules.config and Nextflow scripts.
modules_config - PIRATE found in conf/modules.config and Nextflow scripts.
modules_config - PREPARE_REPORT_INPUT found in conf/modules.config and Nextflow scripts.
modules_config - QUAST found in conf/modules.config and Nextflow scripts.
modules_config - REFORMAT_PIRATE_RESULTS found in conf/modules.config and Nextflow scripts.
modules_config - SAMPLESHEET_CHECK found in conf/modules.config and Nextflow scripts.
modules_config - SAMTOOLS_FAIDX found in conf/modules.config and Nextflow scripts.
modules_config - SAMTOOLS_INDEX found in conf/modules.config and Nextflow scripts.
modules_config - SEQKIT_HEAD found in conf/modules.config and Nextflow scripts.
modules_config - SEQKIT_SLIDING found in conf/modules.config and Nextflow scripts.
modules_config - SOURMASH_COMPARE found in conf/modules.config and Nextflow scripts.
modules_config - SOURMASH_SKETCH found in conf/modules.config and Nextflow scripts.
modules_config - SPADES found in conf/modules.config and Nextflow scripts.
modules_config - SRATOOLS_FASTERQDUMP found in conf/modules.config and Nextflow scripts.
modules_config - SUBSET_BUSCO_GENES found in conf/modules.config and Nextflow scripts.
modules_config - SUBSET_CORE_GENES found in conf/modules.config and Nextflow scripts.
modules_config - TABIX_BGZIP found in conf/modules.config and Nextflow scripts.
modules_config - TABIX_TABIX found in conf/modules.config and Nextflow scripts.
modules_config - TRIM_AND_SKETCH found in conf/modules.config and Nextflow scripts.
modules_config - VCF_TO_SNP_ALIGN found in conf/modules.config and Nextflow scripts.
modules_config - VCFLIB_VCFFILTER found in conf/modules.config and Nextflow scripts.
nfcore_yml - Repository type in .nf-core.yml is valid: pipeline
nfcore_yml - nf-core version in .nf-core.yml is set to the latest version: 3.5.1
rocrate_readme_sync - RO-Crate descriptions are in sync with README.md.
version_consistency - Version tags are consistent: manifest.version = 1.1.0, nfcore_yml.version = 1.1.0

Run details

nf-core/tools version 3.5.1
Run at 2026-02-13 21:36:48

1.1.0dev

…1.0dev

1.1.0dev fix version issue

jonasscheid · 2026-01-30T08:12:25Z


        // Settings to avoid API rate limits and not put too much stress on servers
-        maxForks = secrets.NCBI_API_KEY ? 8 : 3 // NCBI allows 3 requests/second without a key and 10 with
+        maxForks = params.max_parallel_downloads ?: (secrets.NCBI_API_KEY ? 9 : 1)


Is this duplication needed since you have the global definition in L243

Im not sure I understand. I dont see a global definition on L243

Sorry, I got confused with the lines. The question is: Can you harmonise the maxForks (maybe via label in base.config) to not repeat this line? Maybe even more worth to do labeling with your ressource configs in base.config (you are allowed to extend this)

EDIT: Nevermind seeing your comments below

jonasscheid

My comments are addressed in #194. Great stuff 👌🏻 After merging this it's ready to go from my side

1.1.0 release reviewer suggested changes

nf-core-bot · 2026-02-06T17:17:40Z

Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.5.1.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

zachary-foster · 2026-02-09T17:06:51Z

Thanks!

grunwald

#189
Please address issue 189. Otherwise good to go.

Fix singularity container

Zachary Foster and others added 30 commits June 27, 2025 13:47

start branch for 1.1.0dev

b8d6ad1

merge

dc119f2

update readme

cb7c658

increment verison in main report

1525842

Template update for nf-core/tools version 3.3.2

1fd9f0e

Merge branch 'dev' into nf-core-template-merge-3.3.2

5722593

Merge pull request #178 from nf-core/nf-core-template-merge-3.3.2

38f5390

Important! Template update for nf-core/tools v3.3.2

merge

0803960

update metadata

01d5329

added log

1201c81

fix: update maxForks setting for local executor in modules.config

1d8f117

Add max_parallel_downloads parameter and cloud/cluster profiles

5136f46

update changelog

d0d02d1

adjust parallel download defaults

390af26

added more known output types for PathoSurveilR

180db10

refined descriptions of outputs

5337ff8

prevent error when no contextual references canbe selected

156713c

feat: add descriptive names to pathogen surveillance output JSON

be4184a

added primary field to output metadata

54ae758

update multiqc

2aef7b7

modify whihc outputs are primary

44eb7fa

;

reverted to older multiqc to avoid error on CQLS cluster

4829668

Merge branch '1.1.0dev' of github.com:grunwaldlab/pathogensurveillanc…

b5589d5

…e into 1.1.0dev

update main report dockerfile

c9fa520

add more description to readme

f76a1fd

Merge branch '1.1.0dev' of github.com:grunwaldlab/pathogensurveillanc…

d859a30

…e into 1.1.0dev

update find assembleis conda env

40f9b18

update find assemblies docker

88bfcb7

Removed redundant reference_id column in output of PICK_ASSEMBLIES

6427f54

include taxa within 1% of the highest ANI match

75ecf44

Zachary Foster and others added 3 commits January 25, 2026 11:06

update bakta and nanoplot to work with conda

253a083

patched baktadbdownloda

cc47dda

Merge pull request #176 from grunwaldlab/1.1.0dev

0618739

1.1.0dev

zachary-foster marked this pull request as draft January 26, 2026 18:43

Zachary Foster and others added 10 commits January 27, 2026 08:43

update some modules

5947352

modules updates and added report example

c327f9d

pre-commit should ignore html files

518ab40

Merge pull request #190 from grunwaldlab/1.1.0dev

e85b7a1

1.1.0dev

increase required nextflow version to 25.04.6

ed80919

merge

41c1026

Merge pull request #192 from grunwaldlab/1.1.0dev

1fc512e

1.1.0dev

change version to 1.1.0 in .nf-core.yml

4262339

Merge branch 'dev' of github.com:nf-core/pathogensurveillance into 1.…

21b2ee5

…1.0dev

Merge pull request #193 from grunwaldlab/1.1.0dev

7ccd321

1.1.0dev fix version issue

zachary-foster marked this pull request as ready for review January 28, 2026 23:14

jonasscheid requested changes Jan 30, 2026

View reviewed changes

zachary-foster and others added 4 commits February 2, 2026 11:46

changes requested by reviewer

4fbc162

use wave containers for singularity images

ef72f5f

update test snapshot

40a0179

use sequera singulraity container for main report

f2e20b4

jonasscheid approved these changes Feb 6, 2026

View reviewed changes

Merge pull request #194 from grunwaldlab/1.1.0dev

5f014fc

1.1.0 release reviewer suggested changes

fix singularity container

6de4be1

zachary-foster requested a review from grunwald February 9, 2026 17:21

grunwald approved these changes Feb 9, 2026

View reviewed changes

Merge pull request #195 from grunwaldlab/1.1.0dev

f9a0d73

Fix singularity container

zachary-foster merged commit 13547ea into master Feb 13, 2026
15 checks passed

Conversation

zachary-foster commented Jan 26, 2026

Uh oh!

github-actions Bot commented Jan 26, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

nf-core pipelines lint overall result: Passed ✅ ⚠️

❗ Test warnings:

❔ Tests ignored:

✅ Tests passed:

Run details

Uh oh!

Uh oh!

Uh oh!

jonasscheid Jan 30, 2026

Choose a reason for hiding this comment

Uh oh!

zachary-foster Feb 2, 2026

Choose a reason for hiding this comment

Uh oh!

jonasscheid Feb 3, 2026 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Choose a reason for hiding this comment

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

jonasscheid left a comment

Choose a reason for hiding this comment

Uh oh!

nf-core-bot commented Feb 6, 2026

Uh oh!

zachary-foster commented Feb 9, 2026

Uh oh!

grunwald left a comment

Choose a reason for hiding this comment

Uh oh!

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

4 participants

github-actions Bot commented Jan 26, 2026 •

edited

Loading

`nf-core pipelines lint` overall result: Passed ✅ ⚠️

jonasscheid Feb 3, 2026 •

edited

Loading