second reviewer comments resolve

[vagkaratzas]

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the pipeline conventions in the contribution docs
• If necessary, also make a PR on the nf-core/proteinannotator branch on the nf-core/test-datasets repository.
• Make sure your code lints (nf-core pipelines lint).
• Ensure the test suite passes (e.g. nf-test test */local --profile=~test,docker for all new local tests).
• Check for unexpected warnings in debug mode (nf-test test */local --profile=~test,docker,debug).
• Usage Documentation in docs/usage.md is updated.
• Output Documentation in docs/output.md is updated.
• CHANGELOG.md is updated.
• README.md is updated (including new tool citations and authors/contributors).

[nf-core-bot]

Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.5.1.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

[jfy133]

Except for that one comment these address my comments!

[vagkaratzas]

Except for that one comment these address my comments!

Since it was non-blocking, I'll go ahead, and add this to future tasks :P