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New module cellpose#45

Merged
heylf merged 10 commits into
nf-core:add-nf-core-module-cellposefrom
khersameesh24:new-module-cellpose
Jan 24, 2025
Merged

New module cellpose#45
heylf merged 10 commits into
nf-core:add-nf-core-module-cellposefrom
khersameesh24:new-module-cellpose

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@khersameesh24
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/spatialxe branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

Comment thread modules/local/preprocess/main.nf Outdated
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@khersameesh24 could you please remove the proseq module from the PR to prevent merge conflict.

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If Proseqg is removed from PR then we can merge

@khersameesh24
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If Proseqg is removed from PR then we can merge

Done

@heylf heylf merged commit 4102de1 into nf-core:add-nf-core-module-cellpose Jan 24, 2025
@khersameesh24 khersameesh24 deleted the new-module-cellpose branch September 15, 2025 23:28
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2 participants