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choice of segmentation, changes to baysor, updated metromap#95

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khersameesh24 merged 11 commits into
nf-core:devfrom
khersameesh24:dev
Aug 19, 2025
Merged

choice of segmentation, changes to baysor, updated metromap#95
khersameesh24 merged 11 commits into
nf-core:devfrom
khersameesh24:dev

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@khersameesh24
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PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/spatialxe branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

@khersameesh24 khersameesh24 requested a review from heylf July 21, 2025 11:29
@khersameesh24 khersameesh24 changed the title Dev choice of segmentation, changes to baysor, updated metromap Jul 21, 2025
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Warning

Newer version of the nf-core template is available.

Your pipeline is using an old version of the nf-core template: 3.2.1.
Please update your pipeline to the latest version.

For more documentation on how to update your pipeline, please see the nf-core documentation and Synchronisation documentation.

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LGTM

@khersameesh24 khersameesh24 merged commit b4e4926 into nf-core:dev Aug 19, 2025
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3 participants