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[DO NOT MERGE] Pseudo PR for first release#54#21

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mashehu wants to merge 543 commits intoTEMPLATEfrom
dev
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[DO NOT MERGE] Pseudo PR for first release#54#21
mashehu wants to merge 543 commits intoTEMPLATEfrom
dev

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@mashehu mashehu commented Apr 16, 2026

Do not merge! This is a PR of dev compared to the TEMPLATE branch for whole-pipeline reviewing purposes. Changes should be made to dev and this PR should not be merged! The actual release PR is at #17

…cies tag in get accessions modules; display a warn message when no dataset is found
OlivierCoen and others added 30 commits March 30, 2026 08:40
Fix some bugs and pass tests with conda and apptainer
remove tests for CI to try and avoid "No space left on disk" error
Increase max shards for nf-test on CI runners
Fix minor issues in doc / code style and fix bug in species selection in Expression Atlas get accessions
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