TEMPLATE: fix nf-test scope to ignore nf-core module/swf tests

CHANGELOG.md

@@ -12,6 +12,8 @@
 
 ### Modules
 
+- TEMPLATE: fix nf-test scope to ignore nf-core module/swf tests ([#3609](https://github.com/nf-core/tools/pull/3609))
+
 ### Subworkflows
 
 ### General

nf_core/pipeline-template/nf-test.config

@@ -9,7 +9,7 @@ config {
     configFile "tests/nextflow.config"
 
     // ignore tests coming from the nf-core/modules repo
-    ignore 'modules/nf-core/**/*', 'subworkflows/nf-core/**/*'
+    ignore 'modules/nf-core/**/tests/*', 'subworkflows/nf-core/**/tests/*'
 
     // run all test with defined profile(s) from the main nextflow.config
     profile "test"

pyproject.toml

@@ -6,6 +6,8 @@ requires = ["setuptools>=40.6.0", "wheel"]
 markers = ["datafiles: load datafiles"]
 testpaths = ["tests"]
 python_files = ["test_*.py"]
+asyncio_mode = "auto"
+asyncio_default_fixture_loop_scope = "function"
 norecursedirs = [
     ".*",
     "build",

tests/pipelines/test_create_app.py

@@ -12,11 +12,11 @@ async def test_app_bindings():
     app = PipelineCreateApp()
     async with app.run_test() as pilot:
         # Test pressing the D key
-        assert app.dark
+        assert app.theme == "textual-dark"
         await pilot.press("d")
-        assert not app.dark
+        assert app.theme == "textual-light"
         await pilot.press("d")
-        assert app.dark
+        assert app.theme == "textual-dark"
 
         # Test pressing the Q key
         await pilot.press("q")