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Merge #25 first.

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pull-assistant bot commented May 11, 2020

Score: 0.99

Best reviewed: commit by commit


Optimal code review plan (1 warning)

FIX: Correctly pin niworkflows branch and use new interface

setup.cfg 50% changes removed in enh: better pin spec...

     enh: better pin specific commit

     enh: setup a smoke test on CircleCI + minor improvements to CLI

     enh: add a CLI argument for modality

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Comment on lines 134 to 136
docker run -u $( id -u ) --rm -it -v /tmp/templateflow:/home/nirodents/.cache/templateflow \
$PWD/nirodents/data:/data -v /tmp/workdir:/work -w /work nirodents:latest \
artsBrainExtraction /data/15_1_T2_Quick_RAS.nii.gz --sloppy
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this adds a smoke test on the example dataset.

@oesteban oesteban force-pushed the enh/revise-workflow branch from 0207f95 to 6dc1416 Compare May 11, 2020 01:14
@oesteban oesteban force-pushed the enh/revise-workflow branch from 6dc1416 to f4e1de8 Compare May 11, 2020 04:18
default=False,
help="Use low-quality tools for speed - TESTING ONLY",
)
return parser
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Should we also have an argument for modality? T2w or mp2rage?

@oesteban oesteban merged commit 24c667a into master May 11, 2020
@oesteban oesteban deleted the enh/revise-workflow branch May 11, 2020 16:08
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3 participants