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out dir for epi_reg is compulsory but meaningless for nipype #1180

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Merged
chrisgorgo merged 1 commit into from
Aug 13, 2015
+3 −2
Merged

out dir for epi_reg is compulsory but meaningless for nipype #1180

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4 changes: 2 additions & 2 deletions nipype/interfaces/fsl/epi.py
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Original file line number Diff line number Diff line change
Expand Up @@ -568,8 +568,8 @@ class EpiRegInputSpec(FSLCommandInputSpec):
position=-3, desc='wholehead T1 image')
t1_brain = File(exists=True, argstr='--t1brain=%s', mandatory=True,
position=-2, desc='brain extracted T1 image')
out_base = traits.String(desc='output base name', argstr='--out=%s',
position=-1)
out_base = traits.String("epi2struct", desc='output base name', argstr='--out=%s',
position=-1, usedefault=True)
fmap = File(exists=True, argstr='--fmap=%s',
desc='fieldmap image (in rad/s)')
fmapmag = File(exists=True, argstr='--fmapmag=%s',
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1 change: 1 addition & 0 deletions nipype/interfaces/fsl/tests/test_auto_EpiReg.py
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Expand Up @@ -29,6 +29,7 @@ def test_EpiReg_inputs():
),
out_base=dict(argstr='--out=%s',
position=-1,
usedefault=True,
),
output_type=dict(),
pedir=dict(argstr='--pedir=%s',
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