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spm coreg fix #1479

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spm coreg fix #1479

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11 changes: 5 additions & 6 deletions nipype/interfaces/spm/preprocess.py
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Original file line number Diff line number Diff line change
Expand Up @@ -322,18 +322,17 @@ class Coregister(SPMCommand):
def _format_arg(self, opt, spec, val):
"""Convert input to appropriate format for spm
"""
if opt == 'target' or (opt == 'source' and self.inputs.jobtype != "write"):
return scans_for_fnames(filename_to_list(val),
keep4d=True)
if opt == 'target' or (opt == 'source' and "write" not in self.inputs.jobtype):
return scans_for_fnames(filename_to_list(val))
if opt == 'apply_to_files':
return np.array(filename_to_list(val), dtype=object)
if opt == 'source' and self.inputs.jobtype == "write":
return scans_for_fnames(filename_to_list(val))
if opt == 'source' and "write" in self.inputs.jobtype:
if isdefined(self.inputs.apply_to_files):
return scans_for_fnames(val + self.inputs.apply_to_files)
else:
return scans_for_fnames(val)
return super(Coregister, self)._format_arg(opt, spec, val)

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@satra satra May 30, 2016

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extra spaces.

def _parse_inputs(self):
"""validate spm coregister options if set to None ignore
"""
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