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Merged
merged 2 commits into from
Jan 4, 2024
Merged

scripts/build-imputation-validation.sh works #27

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e70d399
scripts/build-imputation-validation.sh works
mmaiers-nmdp Jan 4, 2024
476cada
Merge branch 'master' into dec12
pbashyal-nmdp Jan 4, 2024
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2 changes: 2 additions & 0 deletions conf/minimal-configuration.json
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Original file line number Diff line number Diff line change
Expand Up @@ -51,5 +51,7 @@
"imputation_out_miss_filename": "don.miss",
"imputation_out_problem_filename": "don.problem",
"max_haplotypes_number_in_phase": 100,
"imputation_out_path": "output",
"pops_count_file": "output/pop_counts_file.txt"
"imputation_out_path": "output"
}
2 changes: 1 addition & 1 deletion grim/run_impute_def.py
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Expand Up @@ -33,7 +33,7 @@ def run_impute(
graph_files_path = json_conf.get("graph_files_path")
if graph_files_path[-1] != "/":
graph_files_path += "/"
output_dir = json_conf.get("imuptation_out_path", "output")
output_dir = json_conf.get("imputation_out_path", "output")
if output_dir[-1] != "/":
output_dir += "/"
config = {
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2 changes: 1 addition & 1 deletion scripts/runfile.py
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Expand Up @@ -30,7 +30,7 @@

# read the config file
output_dir = "output/"
project_dir = "../"
project_dir = "./"

# Read configuration file and load properties
with open(configuration_file) as f:
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