I'm following the directions in the README to set this up, but I've run into an error.
In Generating Exon Information, the following line gives the following error:
> txdb <- makeTxDbFromUCSC(genome = "hg19", tablename = "refGene") Error in tableNames(ucscTableQuery(session, track = track)) : error in evaluating the argument 'object' in selecting a method for function 'tableNames': Error in normArgTrack(track, trackids) : Unknown track: RefSeq Genes
I'm having trouble understanding this error. Did I set something up wrong, or is this function just broken? If so, do you have suggestions on how to find a workaround? Perhaps I should try the makeTxDb function, as that doesn't appear to call tableNames?
I'm following the directions in the README to set this up, but I've run into an error.
In Generating Exon Information, the following line gives the following error:
> txdb <- makeTxDbFromUCSC(genome = "hg19", tablename = "refGene") Error in tableNames(ucscTableQuery(session, track = track)) : error in evaluating the argument 'object' in selecting a method for function 'tableNames': Error in normArgTrack(track, trackids) : Unknown track: RefSeq GenesI'm having trouble understanding this error. Did I set something up wrong, or is this function just broken? If so, do you have suggestions on how to find a workaround? Perhaps I should try the makeTxDb function, as that doesn't appear to call tableNames?