Stable - Legacy fasta_highlighter update

This update changes a set to a list in _group_all_sequences so that input sequence order is maintained. Before it would randomly order the lists depending on what order the set stored the data.

Stable - Setup.py fix

Fixes an issue when using the legacy fasta_highlighter. Thanks @maflister for finding that and doing it.

Initial Stable Release

This is a stable version of the current version.

This branch includes all necessary and working code for the visualizer and genome_highlighter.

v0.3 Stable

Version 0.3 Stable

v0.3.1 hotfix (Stable)

fasta_highlighter program was erroring because a constructor was not given a default value for a field that program does not use. Added default value and warning to warn of that flag missing on construction of the object.