Add upper and lower layers of the cortex

[shawntanzk]

#gogoeditdiff
Not my favourite definitions and would like feedback
Fixes #2722

[github-actions]

Here's a diff of how these changes impact the classified ontology (on -simple file):

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2022-12-08/uberon-simple.owl
• Loaded from: file:/work/src/ontology/../../master/src/ontology/uberon-simple.owl

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/uberon-simple.owl
• Version IRI: http://purl.obolibrary.org/obo/uberon/releases/2022-12-08/uberon-simple.owl
• Loaded from: file:/work/src/ontology/uberon-simple.owl

Ontology imports

Ontology annotations

UBERON_8440044 http://purl.obolibrary.org/obo/UBERON_8440044

Added

• UBERON_8440044 id "UBERON:8440044"

• UBERON_8440044 definition "A laminar subdivision of the neocortex that is comprised of the more surface layers, commonly layers two through four."

  • database_cross_reference "DOI:10.1101/2022.10.12.511898"

• UBERON_8440044 contributor 0000-0001-7258-9596

• UBERON_8440044 has_obo_namespace "uberon"

• UBERON_8440044 label "upper layers of the cortex"

• Class: UBERON_8440044

• UBERON_8440044 SubClassOf laminar subdivision of the cortex

UBERON_8440051 http://purl.obolibrary.org/obo/UBERON_8440051

Added

• UBERON_8440051 label "lower layers of the cortex"

• UBERON_8440051 has_obo_namespace "uberon"

• UBERON_8440051 definition "A laminar subdivision of the neocortex that is comprised of the deeper layers, commonly layers five and six, however, could also consist part of layer four."

  • database_cross_reference "DOI:10.1101/2022.10.12.511898"

• UBERON_8440051 id "UBERON:8440051"

• UBERON_8440051 contributor 0000-0001-7258-9596

• Class: UBERON_8440051

• UBERON_8440051 SubClassOf laminar subdivision of the cortex

[github-actions]

Here's a diff of your edit file (unreasoned)

Ontology comparison

Left

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/work/src/ontology/../../master/src/ontology/uberon-edit.obo

Right

• Ontology IRI: http://purl.obolibrary.org/obo/uberon/core.owl
• Version IRI: None
• Loaded from: file:/work/src/ontology/uberon-edit.obo

Ontology imports

Ontology annotations

UBERON_8440044 http://purl.obolibrary.org/obo/UBERON_8440044

Added

• UBERON_8440044 id "UBERON:8440044"^^string

• UBERON_8440044 definition "A laminar subdivision of the neocortex that is comprised of the more surface layers, commonly layers two through four."^^string

  • database_cross_reference "DOI:10.1101/2022.10.12.511898"^^string

• UBERON_8440044 contributor 0000-0001-7258-9596

• UBERON_8440044 has_obo_namespace "uberon"^^string

• UBERON_8440044 label "upper layers of the cortex"^^string

• Class: UBERON_8440044

• UBERON_8440044 SubClassOf laminar subdivision of the cortex

UBERON_8440051 http://purl.obolibrary.org/obo/UBERON_8440051

Added

• UBERON_8440051 label "lower layers of the cortex"^^string

• UBERON_8440051 has_obo_namespace "uberon"^^string

• UBERON_8440051 definition "A laminar subdivision of the neocortex that is comprised of the deeper layers, commonly layers five and six, however, could also consist part of layer four."^^string

  • database_cross_reference "DOI:10.1101/2022.10.12.511898"^^string

• UBERON_8440051 id "UBERON:8440051"^^string

• UBERON_8440051 contributor 0000-0001-7258-9596

• Class: UBERON_8440051

• UBERON_8440051 SubClassOf laminar subdivision of the cortex

[patrick-lloyd-ray]

I think the definitions are fine -- the "surface"/"deep" modifiers may not be the most accurate but they are intuitive and express what is meant by the terms well.