Skip to content

updated biospecimen to make required properties more clear #88

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
cgmeyer merged 1 commit into from
Mar 22, 2019
Merged

updated biospecimen to make required properties more clear #88

Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
21 changes: 6 additions & 15 deletions gdcdictionary/schemas/biospecimen.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -55,17 +55,8 @@ required:
- method_of_procurement
- procured_or_purchased
- tissue_type
allOf:
- oneOf:
- required:
- days_to_collection
- required:
- days_to_collection_not_reported
- oneOf:
- required:
- days_to_procurement
- required:
- days_to_procurement_not_reported
- days_to_collection_not_reported
- days_to_procurement_not_reported

properties:
$ref: "_definitions.yaml#/ubiquitous_properties"
Expand Down Expand Up @@ -399,22 +390,22 @@ properties:

days_to_collection:
description: >
The number of days between the index date and the date the biospecimen was collected at laboratory.
The number of days between the index date and the date the biospecimen was received at laboratory that will be processing the biospecimen. If this information is missing, please indicate 'TRUE' for 'days_to_collection_not_reported'. If this information is available, then answer 'FALSE' for 'days_to_collection_not_reported'.
type: integer

days_to_collection_not_reported:
description: >
True/False indicator of whether the number of days between the index date and the date the biospecimen was collected at laboratory is reported.
True/False indicator of whether the number of days between the index date and the date the biospecimen was collected at laboratory is reported. If 'days_to_collection' data is available, please answer 'FALSE' and fill in 'days_to_collection'. If the data are not available, answer 'TRUE'.
type: boolean

days_to_procurement:
description: >
The number of days between the index date and the date the biospecimen was taken from the patient (such as the blood draw).
The number of days between the index date and the date the biospecimen was taken from the patient (such as the blood draw). If this information is missing, please indicate 'TRUE' for 'days_to_procurement_not_reported'. If this information is available, then answer 'FALSE' for 'days_to_procurement_not_reported'.
type: integer

days_to_procurement_not_reported:
description: >
True/False indicator of whether the number of days between the index date and the date the biospecimen was taken from the patient is reported.
True/False indicator of whether the number of days between the index date and the date the biospecimen was taken from the patient is reported. If 'days_to_procurement' data is available, please answer 'FALSE' and fill in 'days_to_procurement'. If the data are not available, answer 'TRUE'.
type: boolean

disease_type:
Expand Down