v1.1.0

What's Changed

• speed up summariseClinicalRecords by @edward-burn in #562
• include delphini by @catalamarti in #574
• add badges in readme by @catalamarti in #575
• Add record duration summary and end-date checks by @cecicampanile in #576
• Add counts to summary if less than 15 labels by @catalamarti in #583
• Figures for the article by @catalamarti in #582
• only subjects in person table used in analyses and fixed percentages … by @cecicampanile in #573
• Include standard_vocabulary in summariseClinicalTable by @cecicampanile in #580
• Update plotPerson with all variables by @cecicampanile in #595
• add if column is required in the summariseMissingData by @cecicampanile in #594
• Set legend labels in plotPerson by @cecicampanile in #591
• cumulative plot if density results are available by @cecicampanile in #597
• add standard and source vocabularies to summariseConceptIdCounts by @cecicampanile in #589
• update readme by @cecicampanile in #596
• include type concept id in summariseClinicalRecords by @cecicampanile in #590
• Add 'end date' output to trend summaries by @cecicampanile in #598
• update documentation by @cecicampanile in #599
• drop temp tables and tryCatch when compute median by @cecicampanile in #601
• v1.1.0 by @cecicampanile in #600

Full Changelog: 1.0.1...v1.1.0

v1.0.1

What's Changed

• Remove deprecated internal functions and add tests by @catalamarti in #525
• Update deprecated function tests for specific DB by @catalamarti in #532
• summarieClinicalRecords to work with all clinical tables by @cecicampanile in #533
• update tables and test tables by @cecicampanile in #535
• Update test-summariseTrend.R by @cecicampanile in #536
• Update tableConceptIdCounts.R by @cecicampanile in #538
• Update mockOmopSketch.R by @cecicampanile in #539
• dont test database characteristics with age group when cdm is local by @cecicampanile in #540
• plot functions updated by @cecicampanile in #534
• fix integer overflow in sql server by @cecicampanile in #542
• attempt fix for bigint concept count by @edward-burn in #543
• without grouping by @edward-burn in #548
• Update tablePerson.R by @cecicampanile in #550
• separate standard, non standard and 0 in summariseClinicalRecords by @cecicampanile in #547
• Update summariseInternal.R by @cecicampanile in #553
• hide, header and group arguments in tables by @cecicampanile in #551
• Update summariseOmopSnapshot.R by @cecicampanile in #556
• Update test-summariseObservationPeriod.R by @cecicampanile in #557
• fix brand by @cecicampanile in #558
• shiny theme by @cecicampanile in #561

Full Changelog: v1.0.0...1.0.1

v1.0.0

What's Changed

• Characterise all mock datasets by @catalamarti in #430
• background in shiny by @cecicampanile in #431
• shiny -> OmopSketchShiny by @catalamarti in #432
• fix plot of characterisation of population in shiny by @cecicampanile in #437
• summariseTrend by @cecicampanile in #433
• add cdm_source in summariseOmopSnapshot by @catalamarti in #438
• summarisePerson by @catalamarti in #440
• SummariseObservationPeriod 1.0.0 by @cecicampanile in #446
• summariseClinicalRecords 1.0 by @cecicampanile in #443
• missing part in shiny characteristics by @cecicampanile in #450
• Mc dev by @catalamarti in #449
• style argument in table and plot functions by @cecicampanile in #451
• Fix: Ensure database compatibility for boolean aggregations in summariseNumeric2 by @merqurio in #457
• Fix documentation for plotObservationPeriod by @cecicampanile in #460
• tableObservationPeriod when byOrder = FALSE by @cecicampanile in #459
• Summarise op minor fix by @cecicampanile in #463
• check for person id not in person table in summariseClinicalRecords by @cecicampanile in #461
• fix test failures by @cecicampanile in #469
• In observation argument by @cecicampanile in #470
• fix shinyCharacteristics by @cecicampanile in #454
• sample to work on the person level by @cecicampanile in #458
• tableConceptIdCounts update by @cecicampanile in #476
• captions in tables by @cecicampanile in #477
• summarisePerson in databaseCharacteristics and shinyCharacteristics by @cecicampanile in #478
• vignettes omopsketch 1.0 by @cecicampanile in #484
• titles in plots by @cecicampanile in #483
• omopsketch to work on local cdm by @cecicampanile in #475
• nameObservationPeriod argument by @cecicampanile in #482
• Concept class summary in summariseClinicalRecords when table is drug_exposure by @cecicampanile in #481
• readme update by @cecicampanile in #494
• sample tables at the beginning in summariseMissingData and summariseConceptIdCounts by @cecicampanile in #496
• deprecate mockOmopSketch by @cecicampanile in #495
• Reduce imports by @catalamarti in #503
• Remove :: from vignettes, readme and examples by @catalamarti in #502
• fix #490 by @catalamarti in #501
• fix #491 by @catalamarti in #500
• Use default of style and type = NULL by @catalamarti in #498
• Tidy vignettes by @catalamarti in #508
• Tidy documentation by @catalamarti in #510
• refine readme by @catalamarti in #505
• Shiny1.0 by @cecicampanile in #513
• Test multiple dbms by @catalamarti in #514
• add logo to shiny by @catalamarti in #516
• Issue 517 & omopviewer 0.5 by @cecicampanile in #518
• Fix doc by @cecicampanile in #519
• release 1.0.0 by @cecicampanile in #520

New Contributors

• @merqurio made their first contribution in #457

Full Changelog: v0.5.1...v1.0.0

v0.5.1

What's Changed

• remove overall results when plotting trends by @cecicampanile in #418

v0.5.0

What's Changed

• Table top concept counts by @cecicampanile in #392
• summariseTableQuality function by @cecicampanile in #396
• specify arguments in examples and deprecate summariseConceptSetCounts by @cecicampanile in #397
• In summariseObservationPeriod age computed after trimming to the study period by @cecicampanile in #403
• summariseInObservation refactoring by @cecicampanile in #390
• fixed warnings in tests by @cecicampanile in #399
• shinyCharacteristics() by @cecicampanile in #401
• observation period functions to work with temp tables by @cecicampanile in #400
• eunomia vocabulary in mockOmopSketch.R by @cecicampanile in #398
• tableQuality() by @cecicampanile in #406
• summariseTableQuality in databaseCharacteristics() by @cecicampanile in #407
• use shinyCharacteristics() to generate the shiny deployed in the website by @cecicampanile in #415
• Update tableClinicalRecords.R by @cecicampanile in #417
• Documentation by @cecicampanile in #416

0.4.0

"sex" and "age" output in summariseInObservation by @cecicampanile #358
source concept in summariseConceptIdCount and tableConceptIdCounts by @cecicampanile #362t
ableInObservation and tableRecordCount by @cecicampanile #363
databaseCharacteristics() function by @cecicampanile #330
Table Record Count and In Observation by @cecicampanile #363
Add new examples by @elinrow #376Vignette explaining missing data functions by @elinrow #375
Update "Summarise observation period" vignette by @cecicampanile #377
Update "Summarise clinical tables records" by @cecicampanile #378
Create shiny app with characterisation of synthetic data by @catalamarti #381
"Summarise concept count" vignette by @cecicampanile #379
Update vocabulary version in summariseOmopSnapshot() by @cecicampanile #383

Release 0.3.1

• remove dplyr::collect() from summariseClinicalRecords() by @cecicampanile #328
• bug with time_interval fixed in summariseMissingData() by @cecicampanile #335
• improved tableConceptIdCounts by @cecicampanile #336
• arranged variable_name and variable_level in tableClinicalRecords by @cecicampanile #337

Release 0.3.0

• eunomiaIsAvailable instead of the deprecated eunomia_is_available by @cecicampanile #316
• Account for int64 in summariseInObservation by @cecicampanile #312
• Add "datatable" as possible table type by @cecicampanile #314
• Interval argument in summariseMissingData and summariseConceptIdCounts, year argument deprecated by @cecicampanile #317
• Only records in observation are accounted in summariseConceptIdCounts and summariseConceptSetCounts by @cecicampanile #319
• vignette with full characterisation and shiny by @cecicampanile #325
• in summariseInObservation and summariseObservationPeriod study range is now applied wih cohortConstructor::trimToDateRange instead of requireInDateRange by @cecicampanile #325

Release 0.2.2

Minor bugs fixed
The dateRange argument defines the interval in which the start_date of the omopTable must lie

Release 0.2.1

Minor issues fixed