fastarious v0.12.0

• #46: Added empty values for Sequence, Quality, SequenceQuality
• #51: Updated the build, cross-compiled with Scala 2.11/2.12
• #52: Dropped spire dependency
• #54: Dropped ncbiHeaders module (hopefully it wasn't used anywhere)
• #25: Changed FASTA-related code to plain old case classes (similarly to FASTQ)
  • Changed parseFasta to Iterator[FASTA] (no Option)
  • Added parseSkipCrap (same as parseFastaDropErrors(skipCrap = true) before)
  • Removed parseFastaDropErrors (replaced with parseFasta)
• Dropped cosas dependency (after #25 and #54 it's not used by anything)

fastarious v0.11.0

• add foldLeft to Quality, SequenceQuality
• add append/prepend to Sequence, Quality, SequenceQuality
• add a package object, type aliases
• add a score to errorP conversion
• add QSymbol, make SequenceQuality use it
• add conversions to seqs of (P|Q)Symbols
• switch to Double for Real numbers :(

fastarious v0.10.0

Everyone should update.

Improvements

• Sequence, Quality, and SequenceQuality types
• FASTQ is much simpler now, being an ID plus a SequenceQuality
• uniform methods for sequence and quality
• complement for DNA-like sequences

Fixes

• The error probabilities where approximated before; they are now fully precise
• more and better tests

fastarious v0.9.0

• #23: Changed FASTQ parsing API to Iterator-ops

fastarious v0.8.0

• #22: Rewrote FASTA parsing iterator implementation using BufferedIterator

fastarious v0.7.0

• #20: Removed better-files dependency

fastarious v0.6.0

All changes related with #17

• add lcl and id to NCBI headers, minor API improvements
• fix NCBI header to String, minor formatting changes

fastarious v0.5.2

This release fixes #14 (we hope) once and for all. Everyone should update.

fastarious v0.5.1

Fixed the FASTA parsing bug, covered more corner cases. See #14.

fastarious v0.5.0

• better tests for fasta and fastq parsing
• unify value class, simplify parse method names, add convenience helpers
• use raw NIO stuff in tests
• Fixed FASTA and FASTQ real Raw type and added an alias for the Value type using that Raw; changed a bit serialization methods