CraftGRN chr22 processed demo data v0.1.0

CraftGRN chr22 processed demo data v0.1.0

Input-only processed demo bundle for the CraftGRN nutrient-stress tutorial.

This release asset contains a one-chromosome chr22 subset and intentionally excludes raw TOBIAS footprint outputs and generated analysis result folders.

Asset:

• nutrient_stress_strict_JASPAR2024_chr22_demo_inputs.tar.gz
• Size: 5.2 MB
• MD5: fa754783186b0e5119387b0405652331

Included files:

• project.yaml with base_dir: .
• data/atac_master.csv restricted to chr22
• data/rna_strict.csv
• data/sample_metadata_strict.csv
• data/episcope_comparisons.csv
• cache/fp_sites_JASPAR2024.csv
• cache/fp_scores_JASPAR2024.csv
• cache/fp_bounds_JASPAR2024.csv

Local validation:

• Portable extraction and load_prep_multiomic_data(..., do_preprocess = FALSE) smoke test passed.
• Module 1 chr22 test: 56 sec wall time, about 675 MB peak RAM, 1,027,757 predicted TFBS rows.
• Module 2 chr22 test: 2 min 40 sec wall time, about 3.6 GB peak RAM, 946,994 final link rows.