v0.12.0

What's Changed

• update fecundity min area variable name for clarity by @eco-ben in #810
• Apply changes to ADRIA to make it compatible with CoralBlox model by @Zapiano in #817
• CompatHelper: add new compat entry for CoralBlox at version 1, (keep existing compat) by @github-actions[bot] in #821
• Julia format GH workflow, format all files by @arlowhite in #790
• Fix docs builder, add .git-blame-ignore-revs and document by @arlowhite in #823
• fix helper dimension size error by @DanTanAtAims in #824
• Add reshape to fix dimension mismatch when logging dhw tolerances by @Rosejoycrocker in #827
• updates docs github action to use Julia 1.10.* by @arlowhite in #829
• Remove Manifest from gitignore by @Zapiano in #830
• Fix docs errors by @arlowhite in #832
• convert recruitment from relative area to area before use by @DanTanAtAims in #834
• Rename metrics :sites dimension with :locations by @Zapiano in #831
• lowercase png extensions to fix Documenter by @arlowhite in #837
• Fix cover loading and size class lower bound by @DanTanAtAims in #833
• feat: migrating and updating docker functionality + publish pipeline by @PeterBaker0 in #839
• fix: stale links in docker docs by @PeterBaker0 in #843
• Fix error in bin size for sensitivity.outcome_map by @Rosejoycrocker in #702
• Overly constrained argument types causing tests to fail by @ConnectedSystems in #844
• feat: restore unit testing and add julia caching by @PeterBaker0 in #845
• fix reefmod domain load initial cover by @DanTanAtAims in #846
• Add metadata to metrics YAXArrays by @Zapiano in #847
• Improve summarize performance by using mapslices by @Zapiano in #862
• Pin NetCDF.jl and Zarr.jl in order to pin DiskArrays.jl by @Zapiano in #864
• Bump actions/checkout from 3 to 4 by @dependabot[bot] in #865
• Bump docker/login-action from 2 to 3 by @dependabot[bot] in #866
• Bump docker/build-push-action from 4 to 6 by @dependabot[bot] in #867
• Bump docker/metadata-action from 4 to 5 by @dependabot[bot] in #868
• Improvements to model performance by reducing allocations by @ConnectedSystems in #871
• Minor change for performance by @ConnectedSystems in #877
• Julia 1.11 Manifest and Pkg update by @arlowhite in #876
• Apply CompatHelper suggestions, free NetCDF,Zarr; add & pin DiskArrays by @arlowhite in #878
• LERC_jll 3 to 4, downgrade DimensionalData to 0.27.9, Julia Pkg update by @arlowhite in #879
• Cyclone mortalities assigned to wrong group by @DanTanAtAims in #888
• Update code and dependencies to GeoMakie v0.7.x by @ConnectedSystems in #884
• DiskArrays 0.4.5, Pkg update by @arlowhite in #889
• Viz metadata by @Zapiano in #863
• Fix StackOverflow error when plotting maps by @ConnectedSystems in #891
• Add counterfactual minus guided/unguided diff at location level by @Zapiano in #726
• Remove duplicate rules by @Zapiano in #899
• Fix rule extraction to handle constant factors by @Zapiano in #870
• Incorporate recruitment to growth constraints and cap seeding to habitable area by @DanTanAtAims in #906
• Add additional convenience functions and update docstrings by @ConnectedSystems in #908
• Remove defunct method seed_corals! by @ConnectedSystems in #909
• Fix DHW scenario viz again by @ConnectedSystems in #903
• Switch to logging number of coral deployed by @ConnectedSystems in #910
• Add DEA functions and plotting to ADRIA.analysis by @Rosejoycrocker in #896
• Add method to display all DHW scenarios for the currently set RCP/SSP by @ConnectedSystems in #914
• Minor fix on docs by @vitorhirata in #920
• Pin DiskArrays to 0.4.9 by @vitorhirata in #922
• Updated factor bounds setting method by @ConnectedSystems in #917
• Pin DiskArrays to 0.4.9 in docs Manifest and v1.11 Manifest by @vitorhirata in #924
• Small change to parameter description to avoid confusion by @ConnectedSystems in #928
• Add extraction of feature set to support analyses and assessment by @ConnectedSystems in #907
• Bump codecov/codecov-action from 4 to 5 by @dependabot[bot] in #901
• CompatHelper: bump compat for DimensionalData to 0.29, (keep existing compat) by @github-actions[bot] in #931
• CompatHelper: bump compat for Makie in [weakdeps] to 0.22, (keep existing compat) by @github-actions[bot] in #930
• CompatHelper: bump compat for YAXArrays to 0.6, (keep existing compat) by @github-actions[bot] in #932
• Fix tests of viz/spatial and metrics/spatial by @vitorhirata in #923
• Avoid reshape for performance by @ConnectedSystems in #933
• Custom categorical distribution by @DanTanAtAims in #927
• Add spatial visualisations for decision matrices by @Rosejoycrocker in #893
• Correct RCP identifier in result directory by @ConnectedSystems in #937
• Add cyclone mortality to documentation by @Zapiano in #936
• Remove synopsis from documentation by @Zapiano in #938
• Minor tweaks to taxa visualization by @ConnectedSystems in #915
• Update docs to configure Julia Formatter extension by @ConnectedSystems in #939
• Replace and deprecate remaining use of site_k_area by @ConnectedSystems in #929
• Considering spatial dispersal of intervention locations by @ConnectedSystems in #934
• Fix docs build by @Zapiano in #945
• Bump julia-actions/julia-format from 3 to 4 by @dependabot[bot] in #948
• Speed up timeseries clustering by @Zapiano in #949
• Fix multiple tests by @Zapiano in #951
• Changes to enable recent RME domain loading by @Zapiano in #952
• Speedup bleaching by @Zapiano in #954
• Update Manifest by @Zapiano in #957
• Bump project version prior to new release by @Zapiano in #968

New Contributors

• @eco-ben made their first contribution in #810
• @vitorhirata made their first contribution in #920

Full Changelog: v0.11.0...v0.12.0