v0.12.0
What's Changed
- update fecundity min area variable name for clarity by @eco-ben in #810
- Apply changes to ADRIA to make it compatible with CoralBlox model by @Zapiano in #817
- CompatHelper: add new compat entry for CoralBlox at version 1, (keep existing compat) by @github-actions[bot] in #821
- Julia format GH workflow, format all files by @arlowhite in #790
- Fix docs builder, add .git-blame-ignore-revs and document by @arlowhite in #823
- fix helper dimension size error by @DanTanAtAims in #824
- Add reshape to fix dimension mismatch when logging dhw tolerances by @Rosejoycrocker in #827
- updates docs github action to use Julia 1.10.* by @arlowhite in #829
- Remove Manifest from gitignore by @Zapiano in #830
- Fix docs errors by @arlowhite in #832
- convert recruitment from relative area to area before use by @DanTanAtAims in #834
- Rename metrics
:sitesdimension with:locationsby @Zapiano in #831 - lowercase png extensions to fix Documenter by @arlowhite in #837
- Fix cover loading and size class lower bound by @DanTanAtAims in #833
- feat: migrating and updating docker functionality + publish pipeline by @PeterBaker0 in #839
- fix: stale links in docker docs by @PeterBaker0 in #843
- Fix error in bin size for
sensitivity.outcome_mapby @Rosejoycrocker in #702 - Overly constrained argument types causing tests to fail by @ConnectedSystems in #844
- feat: restore unit testing and add julia caching by @PeterBaker0 in #845
- fix reefmod domain load initial cover by @DanTanAtAims in #846
- Add metadata to metrics YAXArrays by @Zapiano in #847
- Improve summarize performance by using mapslices by @Zapiano in #862
- Pin NetCDF.jl and Zarr.jl in order to pin DiskArrays.jl by @Zapiano in #864
- Bump actions/checkout from 3 to 4 by @dependabot[bot] in #865
- Bump docker/login-action from 2 to 3 by @dependabot[bot] in #866
- Bump docker/build-push-action from 4 to 6 by @dependabot[bot] in #867
- Bump docker/metadata-action from 4 to 5 by @dependabot[bot] in #868
- Improvements to model performance by reducing allocations by @ConnectedSystems in #871
- Minor change for performance by @ConnectedSystems in #877
- Julia 1.11 Manifest and Pkg update by @arlowhite in #876
- Apply CompatHelper suggestions, free NetCDF,Zarr; add & pin DiskArrays by @arlowhite in #878
- LERC_jll 3 to 4, downgrade DimensionalData to 0.27.9, Julia Pkg update by @arlowhite in #879
- Cyclone mortalities assigned to wrong group by @DanTanAtAims in #888
- Update code and dependencies to GeoMakie v0.7.x by @ConnectedSystems in #884
- DiskArrays 0.4.5, Pkg update by @arlowhite in #889
- Viz metadata by @Zapiano in #863
- Fix StackOverflow error when plotting maps by @ConnectedSystems in #891
- Add counterfactual minus guided/unguided diff at location level by @Zapiano in #726
- Remove duplicate rules by @Zapiano in #899
- Fix rule extraction to handle constant factors by @Zapiano in #870
- Incorporate recruitment to growth constraints and cap seeding to habitable area by @DanTanAtAims in #906
- Add additional convenience functions and update docstrings by @ConnectedSystems in #908
- Remove defunct method
seed_corals!by @ConnectedSystems in #909 - Fix DHW scenario viz again by @ConnectedSystems in #903
- Switch to logging number of coral deployed by @ConnectedSystems in #910
- Add DEA functions and plotting to ADRIA.analysis by @Rosejoycrocker in #896
- Add method to display all DHW scenarios for the currently set RCP/SSP by @ConnectedSystems in #914
- Minor fix on docs by @vitorhirata in #920
- Pin DiskArrays to 0.4.9 by @vitorhirata in #922
- Updated factor bounds setting method by @ConnectedSystems in #917
- Pin DiskArrays to 0.4.9 in docs Manifest and v1.11 Manifest by @vitorhirata in #924
- Small change to parameter description to avoid confusion by @ConnectedSystems in #928
- Add extraction of feature set to support analyses and assessment by @ConnectedSystems in #907
- Bump codecov/codecov-action from 4 to 5 by @dependabot[bot] in #901
- CompatHelper: bump compat for DimensionalData to 0.29, (keep existing compat) by @github-actions[bot] in #931
- CompatHelper: bump compat for Makie in [weakdeps] to 0.22, (keep existing compat) by @github-actions[bot] in #930
- CompatHelper: bump compat for YAXArrays to 0.6, (keep existing compat) by @github-actions[bot] in #932
- Fix tests of viz/spatial and metrics/spatial by @vitorhirata in #923
- Avoid reshape for performance by @ConnectedSystems in #933
- Custom categorical distribution by @DanTanAtAims in #927
- Add spatial visualisations for decision matrices by @Rosejoycrocker in #893
- Correct RCP identifier in result directory by @ConnectedSystems in #937
- Add cyclone mortality to documentation by @Zapiano in #936
- Remove synopsis from documentation by @Zapiano in #938
- Minor tweaks to taxa visualization by @ConnectedSystems in #915
- Update docs to configure Julia Formatter extension by @ConnectedSystems in #939
- Replace and deprecate remaining use of
site_k_areaby @ConnectedSystems in #929 - Considering spatial dispersal of intervention locations by @ConnectedSystems in #934
- Fix docs build by @Zapiano in #945
- Bump julia-actions/julia-format from 3 to 4 by @dependabot[bot] in #948
- Speed up timeseries clustering by @Zapiano in #949
- Fix multiple tests by @Zapiano in #951
- Changes to enable recent RME domain loading by @Zapiano in #952
- Speedup bleaching by @Zapiano in #954
- Update Manifest by @Zapiano in #957
- Bump project version prior to new release by @Zapiano in #968
New Contributors
- @eco-ben made their first contribution in #810
- @vitorhirata made their first contribution in #920
Full Changelog: v0.11.0...v0.12.0