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v4.5.2

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@javild javild released this 22 Nov 12:21
  • Important bugfix: variant-annotation CLI now correctly passes the assembly argument when annotating through WS
  • REST client is now able to handle variant id parsing problems, e.g. 1:645710:A:INS:ME:ALU
  • New variant-annotation parameter added to the CLI: --max-open-files can limit the number of file kept open by RocksDB
  • All writes/reads are now in UTF-8
  • HGVS normalization errors do no longer interrupt the whole annotation process and raise a warning instead
  • Perl scripts querying ENSEMBL APIs improved to properly change ENSEMBL version as appropriate
  • Annotator execution is no longer interrupted if an error raises while trying to normalize a variant. Likewise, will not get interrupted if errors raise during HTSJDK parsing of VCF lines. Warnings will be shown and corresponding variants skipped