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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -26,6 +26,8 @@

* `run_benchmark`: Emit one dataset metadata entry per dataset by de-duplicating on `dataset_id`, rather than by keeping only the `log_cp10k` states. The old filter emitted nothing at all if a dataset ever arrived under a different normalization (PR #48).

* `file_test_mod2`: Declare `uns["normalization_id"]`, which `run_benchmark` reads off this file to decide which method to run on which dataset (PR #30).

## BUG FIXES

* `process_dataset`: Fall back to holding out a quarter of the batches when the dataset has no `obs["is_train"]`, rather than silently producing four empty h5ads. `obs["is_train"]` carries the NeurIPS 2021 competition split and stays optional; `obs["cell_type"]` is now declared and required (PR #28).
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4 changes: 4 additions & 0 deletions src/api/file_test_mod2.yaml
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Expand Up @@ -80,6 +80,10 @@ info:
type: string
description: The organism of the sample in the dataset.
required: false
- name: normalization_id
type: string
description: The unique identifier of the normalization method used.
required: true
- type: string
name: gene_activity_var_names
description: "Names of the gene activity matrix"
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