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MHCflurry 2.3.6

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@iskandr iskandr released this 29 Sep 17:27
· 29 commits to master since this release
6c0f308

MHCflurry 2.3.6

This release clarifies model selection and aligns documentation, examples and
API docstrings with current behavior. Model weights and prediction calculations
are unchanged; the default weights remain 2.3.0.

  • Put the recommended presentation bundle first in mhcflurry downloads info.
    It includes both affinity and processing components.
  • Correct scan thresholds, model-path precedence, parallelism defaults,
    calibration options, return shapes and reproducibility descriptions.
  • Refresh the tutorials and notebooks with N/C flanks and a comparison using
    the same peptides without flanks. Remove obsolete training instructions and
    development-specific prose while retaining historical provenance.
  • Add Docker builds for Intel/AMD and ARM Linux, with bundled presentation
    weights and offline prediction checks. Successful stable-release builds
    publish matching Docker Hub tags and update latest. The CPU image runs
    as a non-root user; Jupyter uses its default access-token authentication.
  • Document Docker publication checks and the separate Bioconda update process.