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All partials work the same way and as documented/mentioned already.
If you modify a partial, then your modifications take over, that's the whole point.

Regardless of the partial you wish to modify, if you changed it then you no longer have upstream contents/changes, that's how it works.
Nothing is blocking you from writing a script checking changes in the upstream partials. (That's what Quarto already does as the original partials come from Pandoc with few changes from Quarto)

See:

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@luifrancgom
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@mcanouil
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Answer selected by luifrancgom
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