Interactive Viewer for the Medical Segmentation Decathlon

Dataset Link

Paper Link

Setup

Download dataset so that:

data/TaskXX_Organ/images...

Example:

Create a new conda environment

conda create -n decathlon python=3.10

Activate Environment

conda activate decathlon

Install dependencies

pip install -r requirements.txt

Running

Run App

marimo run notebook.py

Edit Notebook

marimo edit notebook.py

Marimo Documentation